Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Vt282_RS01855 Genome accession   NZ_AP019649
Coordinates   368011..368535 (+) Length   174 a.a.
NCBI ID   WP_162047218.1    Uniprot ID   -
Organism   Vibrio taketomensis strain C4III282     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 363011..373535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vt282_RS01840 uvrA 363140..365957 (-) 2818 Protein_354 excinuclease ABC subunit UvrA -
  Vt282_RS01845 galU 366075..366950 (-) 876 WP_162062399.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  Vt282_RS01850 qstR 367067..367714 (-) 648 WP_162062400.1 LuxR C-terminal-related transcriptional regulator Regulator
  Vt282_RS01855 ssb 368011..368535 (+) 525 WP_162047218.1 single-stranded DNA-binding protein Machinery gene
  Vt282_RS01860 csrD 368795..370797 (+) 2003 Protein_358 RNase E specificity factor CsrD -
  Vt282_RS01865 - 370801..372243 (+) 1443 WP_162047216.1 MSHA biogenesis protein MshI -
  Vt282_RS01870 pilO 372243..372893 (+) 651 WP_162063658.1 type 4a pilus biogenesis protein PilO -
  Vt282_RS01875 - 372886..373209 (+) 324 WP_232055086.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19478.53 Da        Isoelectric Point: 5.2170

>NTDB_id=73002 Vt282_RS01855 WP_162047218.1 368011..368535(+) (ssb) [Vibrio taketomensis strain C4III282]
MASRGINKVILVGNLGQDPEVRYMSNGGAVANITVATSETWRDKATGEPRERTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEVVVQGYNGVMQMLGGRQGGQGAPMGGQQQQQQQSWGQPQQPAMRQQAPQQNQAPQQQPQ
YNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=73002 Vt282_RS01855 WP_162047218.1 368011..368535(+) (ssb) [Vibrio taketomensis strain C4III282]
ATGGCTAGCCGTGGAATAAACAAAGTTATTTTAGTGGGTAACTTAGGCCAAGACCCAGAAGTACGTTACATGTCTAACGG
CGGCGCTGTTGCAAACATCACGGTTGCAACCTCAGAAACATGGCGTGACAAAGCGACTGGTGAGCCACGTGAAAGAACTG
AGTGGCATCGTGTAGCTCTGTACGGAAAATTAGCTGAAGTTGCAGGTGAATATTTACGTAAAGGCTCTCAAGTATACATT
GAAGGTCAACTGCAAACGCGTAAATGGCAAAACCAGCAGGGCCAAGATCAATACACCACAGAAGTGGTTGTTCAGGGTTA
CAACGGTGTAATGCAGATGCTAGGTGGTCGCCAAGGCGGACAAGGTGCCCCTATGGGTGGTCAGCAACAGCAGCAACAAC
AAAGCTGGGGTCAACCGCAGCAACCAGCAATGCGCCAACAAGCACCACAACAGAATCAAGCGCCTCAGCAACAGCCTCAA
TACAATGAACCACCAATGGATTTTGATGACGACATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.337

100

0.822
  ssb Glaesserella parasuis strain SC1401

52.941

100

0.569
  ssb Neisseria gonorrhoeae MS11

47.222

100

0.489
  ssb Neisseria meningitidis MC58

47.222

100

0.489

Multiple sequence alignment