Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   Vt282_RS01850 Genome accession   NZ_AP019649
Coordinates   367067..367714 (-) Length   215 a.a.
NCBI ID   WP_162062400.1    Uniprot ID   -
Organism   Vibrio taketomensis strain C4III282     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 362067..372714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vt282_RS01840 uvrA 363140..365957 (-) 2818 Protein_354 excinuclease ABC subunit UvrA -
  Vt282_RS01845 galU 366075..366950 (-) 876 WP_162062399.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  Vt282_RS01850 qstR 367067..367714 (-) 648 WP_162062400.1 LuxR C-terminal-related transcriptional regulator Regulator
  Vt282_RS01855 ssb 368011..368535 (+) 525 WP_162047218.1 single-stranded DNA-binding protein Machinery gene
  Vt282_RS01860 csrD 368795..370797 (+) 2003 Protein_358 RNase E specificity factor CsrD -
  Vt282_RS01865 - 370801..372243 (+) 1443 WP_162047216.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25048.87 Da        Isoelectric Point: 7.8637

>NTDB_id=73001 Vt282_RS01850 WP_162062400.1 367067..367714(-) (qstR) [Vibrio taketomensis strain C4III282]
MAKNIYARTLYFLCENKDSHYPIVDLIEENLCIPIPRMEPQDTMLAMQQHKHKILLIDYHEYQQLNSVIRDLPLSNKIFE
TVIFNVEKRLTTEELLSFGNLKALFYKTDSIVDIAYGCGEVINSQNWLPRKVTAQLLHYYRHVFDSQTSPATVDLTTREI
QILRSLQTGASNNRIAEDLFISEFTVKSHLYQIFKKLSVKNRVQAISWAKQHLAS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=73001 Vt282_RS01850 WP_162062400.1 367067..367714(-) (qstR) [Vibrio taketomensis strain C4III282]
ATGGCAAAGAACATTTATGCGAGAACACTGTATTTTCTCTGTGAAAATAAAGACTCCCACTATCCAATTGTAGACCTAAT
TGAAGAAAACCTCTGCATTCCCATCCCTCGCATGGAACCGCAAGATACGATGCTGGCGATGCAGCAGCATAAGCATAAAA
TTTTGCTCATCGATTATCATGAATACCAACAACTCAATAGCGTCATTCGAGACTTGCCTCTGTCGAATAAAATCTTTGAG
ACGGTAATATTTAATGTGGAAAAGCGGCTAACCACTGAGGAGTTACTCAGTTTCGGTAACCTAAAAGCGCTGTTTTACAA
GACTGACAGCATCGTCGATATCGCATATGGTTGTGGTGAAGTTATCAACAGCCAAAACTGGTTACCTCGAAAAGTCACCG
CACAACTTCTACATTACTACCGTCATGTTTTCGATAGCCAAACCTCCCCCGCAACTGTCGATTTGACCACGCGTGAAATT
CAAATACTACGTAGTCTACAAACAGGGGCCTCGAACAATCGAATCGCCGAAGATCTCTTTATTAGTGAGTTCACGGTAAA
ATCCCACCTTTACCAAATCTTCAAGAAGCTGTCTGTAAAGAATCGAGTTCAAGCCATTTCATGGGCAAAGCAACATTTGG
CGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

58.14

100

0.581
  qstR Vibrio cholerae strain A1552

57.277

99.07

0.567
  qstR Vibrio parahaemolyticus RIMD 2210633

56.279

100

0.563

Multiple sequence alignment