Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   N3Z98_RS06575 Genome accession   NZ_CP104325
Coordinates   1299204..1300382 (+) Length   392 a.a.
NCBI ID   WP_131952302.1    Uniprot ID   -
Organism   Campylobacter hepaticus strain RBCL71delta     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1294204..1305382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N3Z98_RS06550 (N3Z98_06550) ctsR 1294786..1295082 (+) 297 WP_066779503.1 transformation system protein Machinery gene
  N3Z98_RS06555 (N3Z98_06555) ctsD 1295060..1296478 (+) 1419 WP_066779506.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  N3Z98_RS06560 (N3Z98_06560) ctsP 1296471..1297079 (+) 609 WP_066779509.1 ATP-binding protein Machinery gene
  N3Z98_RS06565 (N3Z98_06565) ctsX 1297083..1297658 (+) 576 WP_066779512.1 transformation system protein Machinery gene
  N3Z98_RS06570 (N3Z98_06570) ctsE 1297660..1299207 (+) 1548 WP_412766738.1 GspE/PulE family protein Machinery gene
  N3Z98_RS06575 (N3Z98_06575) ctsF 1299204..1300382 (+) 1179 WP_131952302.1 type II secretion system F family protein Machinery gene
  N3Z98_RS06580 (N3Z98_06580) - 1300417..1304931 (-) 4515 WP_268904786.1 hypothetical protein -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 45993.93 Da        Isoelectric Point: 9.8320

>NTDB_id=728636 N3Z98_RS06575 WP_131952302.1 1299204..1300382(+) (ctsF) [Campylobacter hepaticus strain RBCL71delta]
MKFYEIEFLKNNHSYKQIIRAKNLNSAQAKALSRNWKIIHIQEFQKFHFVRLKDENFIFFFKELALLCEAGLSVQEGIKQ
IYLARSCKIIKRVLDNLILAQNLNQAFKNAYFGLNSAELALIHMAENTGKISEVFRQIASLRQKSMENKKQIKKALRYPI
LVFLSTIGAFLFLMLFVMPNFKDWFESLDVELPLITHIMLQSYNFLKIYGVVFLAFFIFLFFTILLCYKYFDSFALYCDF
LFLKLPLFSRLILYNQNHYFFIVFSLLLKSGISISKAFYLASSGLGNRFLMLKYQKILVLLDGGFELSQAFKQMYIVDSL
VFSMLNIAMKSAKLELLSEEIAKYYEQKSQNIMEQFLVLLEPVMTLFVAFLVLFLALGIFLPMWELSAKMHF

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=728636 N3Z98_RS06575 WP_131952302.1 1299204..1300382(+) (ctsF) [Campylobacter hepaticus strain RBCL71delta]
ATGAAATTTTATGAGATAGAATTTCTTAAAAATAATCACTCCTATAAACAAATCATAAGGGCTAAAAATTTAAATAGTGC
TCAAGCAAAAGCCTTGTCTAGGAATTGGAAAATCATACATATTCAAGAATTTCAAAAGTTTCATTTTGTAAGATTAAAAG
ATGAAAATTTTATATTCTTTTTTAAGGAATTGGCTTTATTGTGTGAAGCTGGTTTAAGTGTTCAAGAGGGTATTAAACAA
ATATATCTTGCGCGTTCTTGTAAAATTATAAAAAGGGTATTAGATAATTTAATTTTAGCACAAAATTTAAATCAAGCTTT
TAAAAATGCTTATTTTGGACTAAACTCAGCAGAATTAGCTTTAATCCATATGGCTGAAAATACAGGAAAAATAAGTGAAG
TTTTTAGACAAATTGCTAGTCTTAGGCAAAAAAGTATGGAGAATAAAAAACAAATTAAAAAAGCTTTAAGATATCCTATT
TTAGTTTTTTTAAGTACCATTGGGGCATTTTTGTTTTTAATGCTTTTTGTGATGCCAAATTTTAAAGATTGGTTTGAAAG
TTTGGATGTGGAATTGCCACTTATTACGCATATCATGCTACAAAGTTATAATTTTTTAAAAATTTATGGAGTAGTGTTTC
TTGCATTTTTTATTTTTTTATTTTTTACAATACTATTGTGTTATAAATATTTTGATTCTTTTGCATTGTATTGCGATTTT
TTATTTTTAAAACTACCTTTATTTTCTCGTTTGATTTTATATAATCAAAACCATTATTTTTTTATCGTTTTTTCTCTACT
TTTAAAGAGTGGAATTTCCATTTCCAAAGCTTTTTATCTAGCTAGTTCAGGGCTTGGAAATAGGTTTTTGATGTTAAAAT
ATCAAAAAATTTTAGTTTTATTAGATGGTGGTTTTGAATTAAGTCAAGCTTTTAAACAAATGTATATTGTGGATTCTTTG
GTCTTTTCTATGCTTAATATTGCCATGAAAAGTGCTAAATTAGAGCTTTTAAGCGAAGAAATTGCTAAGTATTATGAGCA
AAAAAGTCAAAATATCATGGAGCAATTTTTAGTTTTATTAGAACCTGTAATGACTTTATTTGTAGCTTTTTTGGTTTTAT
TTTTAGCTTTGGGCATATTTTTGCCTATGTGGGAGCTTAGTGCTAAAATGCATTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

70.153

100

0.702