Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   N3Z98_RS06550 Genome accession   NZ_CP104325
Coordinates   1294786..1295082 (+) Length   98 a.a.
NCBI ID   WP_066779503.1    Uniprot ID   A0A424Z0F6
Organism   Campylobacter hepaticus strain RBCL71delta     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1289786..1300082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N3Z98_RS06540 (N3Z98_06540) - 1290476..1291120 (+) 645 WP_066779498.1 HAD family hydrolase -
  N3Z98_RS06545 (N3Z98_06545) nifJ 1291205..1294765 (+) 3561 WP_066779501.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  N3Z98_RS06550 (N3Z98_06550) ctsR 1294786..1295082 (+) 297 WP_066779503.1 transformation system protein Machinery gene
  N3Z98_RS06555 (N3Z98_06555) ctsD 1295060..1296478 (+) 1419 WP_066779506.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  N3Z98_RS06560 (N3Z98_06560) ctsP 1296471..1297079 (+) 609 WP_066779509.1 ATP-binding protein Machinery gene
  N3Z98_RS06565 (N3Z98_06565) ctsX 1297083..1297658 (+) 576 WP_066779512.1 transformation system protein Machinery gene
  N3Z98_RS06570 (N3Z98_06570) ctsE 1297660..1299207 (+) 1548 WP_412766738.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11583.45 Da        Isoelectric Point: 6.3429

>NTDB_id=728631 N3Z98_RS06550 WP_066779503.1 1294786..1295082(+) (ctsR) [Campylobacter hepaticus strain RBCL71delta]
MLFFSFLIAQNDFEDKKKYTDFLKLQNPFINPTFEKLQAIKISAIMFDRVKIDDKWYKKGDSIDEAIISKIDTQEIKIQY
DNLEFVIPINKNGKISIN

Nucleotide


Download         Length: 297 bp        

>NTDB_id=728631 N3Z98_RS06550 WP_066779503.1 1294786..1295082(+) (ctsR) [Campylobacter hepaticus strain RBCL71delta]
ATCTTATTTTTTAGCTTTTTAATAGCACAAAATGATTTTGAAGATAAGAAAAAATATACAGATTTTCTTAAGCTTCAAAA
TCCCTTCATAAACCCCACTTTTGAAAAATTACAAGCAATTAAAATTAGTGCTATCATGTTTGATAGAGTAAAAATAGATG
ATAAATGGTATAAAAAAGGTGATAGTATTGATGAAGCTATCATTAGCAAGATAGATACTCAAGAAATTAAAATACAATAT
GATAATTTAGAATTTGTTATTCCAATAAATAAAAATGGTAAGATTAGTATTAATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A424Z0F6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

62.136

100

0.653