Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   N3Z98_RS06555 Genome accession   NZ_CP104325
Coordinates   1295060..1296478 (+) Length   472 a.a.
NCBI ID   WP_066779506.1    Uniprot ID   A0A6A7JSY7
Organism   Campylobacter hepaticus strain RBCL71delta     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1290060..1301478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N3Z98_RS06540 (N3Z98_06540) - 1290476..1291120 (+) 645 WP_066779498.1 HAD family hydrolase -
  N3Z98_RS06545 (N3Z98_06545) nifJ 1291205..1294765 (+) 3561 WP_066779501.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  N3Z98_RS06550 (N3Z98_06550) ctsR 1294786..1295082 (+) 297 WP_066779503.1 transformation system protein Machinery gene
  N3Z98_RS06555 (N3Z98_06555) ctsD 1295060..1296478 (+) 1419 WP_066779506.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  N3Z98_RS06560 (N3Z98_06560) ctsP 1296471..1297079 (+) 609 WP_066779509.1 ATP-binding protein Machinery gene
  N3Z98_RS06565 (N3Z98_06565) ctsX 1297083..1297658 (+) 576 WP_066779512.1 transformation system protein Machinery gene
  N3Z98_RS06570 (N3Z98_06570) ctsE 1297660..1299207 (+) 1548 WP_412766738.1 GspE/PulE family protein Machinery gene
  N3Z98_RS06575 (N3Z98_06575) ctsF 1299204..1300382 (+) 1179 WP_131952302.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 53597.08 Da        Isoelectric Point: 7.1833

>NTDB_id=728632 N3Z98_RS06555 WP_066779506.1 1295060..1296478(+) (ctsD) [Campylobacter hepaticus strain RBCL71delta]
MVRLVLISCLFCCHHLFAIDCQKRLFDISINEKVSIQESLDELARYCSFSIIVKDKIAKAKLENLQNSVNIHQMSLDEIF
NFFIKEHDLDYDFDGKILRIVGIDTKIFKISYITSVREGQSITKASVDSKPRQSEYGGGFNDMEDNMIKSMEKFDFWQNI
EKEITTLLKNSHENYEFKPPIINSNAGLIIVTGTNSQLQSVKNYLQKLENRLKKQVIIDVSILAVNLNQSHSSGINWQNF
NIDFHSQTSKNENSFIQIQNGQGFVKNLGLRANLNFDSVINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKES
SKGNENGVIISESYNNYSVFIGILLNILPEISDDGKITLRINPSLSDFKYPQDNKRQKEPRNIAPDTVQKKLSSVVRMEN
NQTLILGGLISHDKTNDNNAVNILSKLPIFGPLFRSENVRSNTTEIVFIITPSIVDYAHLPSLKDLGFKYYE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=728632 N3Z98_RS06555 WP_066779506.1 1295060..1296478(+) (ctsD) [Campylobacter hepaticus strain RBCL71delta]
ATGGTAAGATTAGTATTAATTAGTTGTTTGTTTTGTTGTCATCATCTTTTTGCAATAGATTGTCAAAAACGCCTTTTTGA
TATTAGCATTAATGAGAAAGTAAGCATACAAGAAAGTCTTGATGAATTAGCAAGATATTGTTCTTTTAGCATTATTGTTA
AGGATAAAATTGCTAAAGCAAAACTAGAAAATCTCCAAAATTCTGTTAATATCCATCAAATGAGTCTTGATGAAATTTTT
AATTTTTTCATTAAGGAACATGATCTTGATTATGATTTTGATGGAAAAATTTTAAGAATTGTAGGTATAGATACAAAGAT
TTTTAAAATAAGTTATATTACTTCTGTTAGAGAGGGTCAAAGCATTACTAAAGCTTCTGTAGATTCAAAACCAAGACAAA
GTGAATATGGGGGAGGTTTTAATGATATGGAAGATAATATGATTAAAAGTATGGAGAAATTTGATTTTTGGCAAAATATA
GAAAAAGAGATTACTACATTATTGAAAAATTCTCATGAAAATTATGAGTTTAAACCCCCAATCATCAATTCTAATGCAGG
TCTTATTATCGTTACGGGGACAAATTCACAACTTCAAAGTGTTAAAAATTATTTACAAAAATTAGAAAATCGTCTTAAAA
AACAAGTTATTATTGATGTGAGTATACTTGCTGTTAATCTTAATCAAAGTCATTCTAGCGGGATTAATTGGCAAAATTTT
AATATAGATTTTCATTCTCAAACAAGTAAGAATGAAAATTCTTTTATACAAATTCAAAATGGTCAGGGTTTTGTTAAAAA
TTTAGGTTTAAGGGCAAATTTAAATTTTGATTCTGTTATTAATTTTCTTTCTCAAAATGGTAAAACCAGTGTGCTTTCTA
ATCCAAAACTTATGGCTTTAAACAATCAACAAGCAATTATTTCTGTAGGAGATACCATAAATTATCAAGTTAAAGAAAGT
TCTAAAGGGAATGAAAATGGTGTAATTATTAGTGAAAGTTATAATAATTATTCAGTTTTTATAGGTATTTTGCTTAATAT
CTTGCCTGAGATTTCTGATGATGGTAAGATTACATTAAGAATTAATCCAAGTTTGAGTGATTTTAAATACCCACAGGATA
ATAAAAGACAAAAAGAACCCCGTAACATTGCCCCTGATACTGTGCAAAAAAAGCTTTCTAGTGTAGTGCGTATGGAAAAT
AATCAAACTTTGATTTTAGGTGGACTTATTTCTCATGATAAAACTAATGATAATAATGCTGTAAATATTTTATCAAAACT
TCCTATTTTTGGACCCCTTTTTAGGAGTGAGAATGTGCGTTCTAATACCACTGAGATTGTTTTTATCATCACTCCGAGTA
TAGTTGATTATGCTCATTTACCCAGTCTTAAAGATTTAGGATTTAAATATTATGAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(283-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A7JSY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

84.746

100

0.847