Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   N3Z98_RS06565 Genome accession   NZ_CP104325
Coordinates   1297083..1297658 (+) Length   191 a.a.
NCBI ID   WP_066779512.1    Uniprot ID   A0A424Z0H1
Organism   Campylobacter hepaticus strain RBCL71delta     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1292083..1302658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N3Z98_RS06550 (N3Z98_06550) ctsR 1294786..1295082 (+) 297 WP_066779503.1 transformation system protein Machinery gene
  N3Z98_RS06555 (N3Z98_06555) ctsD 1295060..1296478 (+) 1419 WP_066779506.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  N3Z98_RS06560 (N3Z98_06560) ctsP 1296471..1297079 (+) 609 WP_066779509.1 ATP-binding protein Machinery gene
  N3Z98_RS06565 (N3Z98_06565) ctsX 1297083..1297658 (+) 576 WP_066779512.1 transformation system protein Machinery gene
  N3Z98_RS06570 (N3Z98_06570) ctsE 1297660..1299207 (+) 1548 WP_412766738.1 GspE/PulE family protein Machinery gene
  N3Z98_RS06575 (N3Z98_06575) ctsF 1299204..1300382 (+) 1179 WP_131952302.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 23062.95 Da        Isoelectric Point: 10.1543

>NTDB_id=728634 N3Z98_RS06565 WP_066779512.1 1297083..1297658(+) (ctsX) [Campylobacter hepaticus strain RBCL71delta]
MQERIDELEARYKYFLLKKYLKYLFFVILFFIIGLSFFVFLQKYKQQKNIYLKALEYKINLEQKLAKAQILQEKNKIAKE
RLKPQILKTEEENTKKIEINSRNLNISHLRKSFYENPSYEKALNLANKYFDIKAYKKSIFWALKANELNKEKQDSWLVFA
KAKRALGEEKEAQSVLDAYVNYYGFMEFNAR

Nucleotide


Download         Length: 576 bp        

>NTDB_id=728634 N3Z98_RS06565 WP_066779512.1 1297083..1297658(+) (ctsX) [Campylobacter hepaticus strain RBCL71delta]
ATGCAAGAAAGAATTGATGAGCTAGAGGCTAGGTATAAATATTTTTTGCTTAAAAAATATTTAAAATATTTATTTTTTGT
GATTTTATTTTTTATAATAGGGTTGAGTTTTTTTGTGTTTTTGCAAAAATATAAGCAGCAAAAAAATATTTATCTAAAAG
CACTAGAATATAAAATCAATTTAGAGCAAAAGCTTGCTAAGGCGCAAATTTTGCAAGAAAAAAATAAAATTGCTAAAGAA
AGATTAAAGCCACAAATATTAAAAACAGAAGAAGAAAATACGAAAAAGATAGAAATTAATTCACGAAATTTAAATATTTC
GCATTTGCGTAAATCTTTTTATGAAAATCCAAGTTATGAAAAGGCTTTGAATTTGGCAAATAAATATTTTGATATTAAAG
CTTATAAAAAGTCAATATTTTGGGCTTTAAAAGCCAATGAATTAAATAAAGAAAAACAAGATTCTTGGTTGGTTTTTGCA
AAAGCTAAAAGGGCTTTGGGAGAAGAAAAAGAAGCTCAAAGTGTTTTAGATGCTTATGTGAATTATTATGGTTTTATGGA
GTTTAATGCAAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A424Z0H1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

69.744

100

0.712