Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   N3Z98_RS06560 Genome accession   NZ_CP104325
Coordinates   1296471..1297079 (+) Length   202 a.a.
NCBI ID   WP_066779509.1    Uniprot ID   A0A424Z0T2
Organism   Campylobacter hepaticus strain RBCL71delta     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1291471..1302079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N3Z98_RS06550 (N3Z98_06550) ctsR 1294786..1295082 (+) 297 WP_066779503.1 transformation system protein Machinery gene
  N3Z98_RS06555 (N3Z98_06555) ctsD 1295060..1296478 (+) 1419 WP_066779506.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  N3Z98_RS06560 (N3Z98_06560) ctsP 1296471..1297079 (+) 609 WP_066779509.1 ATP-binding protein Machinery gene
  N3Z98_RS06565 (N3Z98_06565) ctsX 1297083..1297658 (+) 576 WP_066779512.1 transformation system protein Machinery gene
  N3Z98_RS06570 (N3Z98_06570) ctsE 1297660..1299207 (+) 1548 WP_412766738.1 GspE/PulE family protein Machinery gene
  N3Z98_RS06575 (N3Z98_06575) ctsF 1299204..1300382 (+) 1179 WP_131952302.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23952.37 Da        Isoelectric Point: 10.1253

>NTDB_id=728633 N3Z98_RS06560 WP_066779509.1 1296471..1297079(+) (ctsP) [Campylobacter hepaticus strain RBCL71delta]
MNKIIPFREAIFHQMDKILSNNRALIFLWGKSGCGKSVLLQRLAKKYQIDFIHEMFKDEIFLKEKIEFLKHKGQKLIILD
EVGKYNHDMLENIRIYSDTMSFVLASHKYLNLFKKEYFKSRLSASFELKKPDLKELDDYIKLKFGLSFSTSCLKILKKIA
KGNLRYLDKTLKTFCEINIYFDKNKTQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=728633 N3Z98_RS06560 WP_066779509.1 1296471..1297079(+) (ctsP) [Campylobacter hepaticus strain RBCL71delta]
ATGAATAAGATCATTCCTTTTAGAGAAGCAATTTTTCATCAAATGGATAAGATTTTATCAAATAATAGGGCTTTGATTTT
TTTATGGGGAAAAAGTGGGTGTGGAAAAAGTGTATTGTTGCAAAGATTAGCAAAAAAATATCAAATTGATTTTATTCATG
AAATGTTTAAAGATGAGATTTTTTTAAAAGAAAAAATAGAGTTTTTAAAGCATAAAGGACAAAAATTAATTATTTTAGAT
GAAGTAGGAAAATATAACCACGATATGTTAGAAAATATTAGAATTTATAGTGATACTATGAGTTTTGTTTTAGCTTCACA
TAAGTATTTAAATCTTTTTAAAAAAGAATATTTTAAAAGTCGTTTAAGCGCATCTTTTGAACTTAAAAAACCTGATCTTA
AAGAACTTGATGATTATATTAAATTAAAATTTGGGCTTAGTTTTTCAACATCATGTCTTAAAATTTTAAAAAAAATTGCT
AAGGGGAATTTAAGATATTTAGATAAGACTTTAAAGACTTTTTGTGAGATTAATATTTATTTTGATAAAAATAAAACTCA
AGAATATATTTTAAAACTTAGTGCTTTAGAAAACGGTTTATTAAGGTAG

Domains

Predicted by InterproScan.

RNA helicase (RNA_helicase)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A424Z0T2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

73.762

100

0.738