Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   NZD86_RS21895 Genome accession   NZ_CP104064
Coordinates   4376611..4376772 (+) Length   53 a.a.
NCBI ID   WP_268046999.1    Uniprot ID   -
Organism   Alicyclobacillus dauci strain DSM 28700     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4371611..4381772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NZD86_RS21875 (NZD86_21895) - 4371707..4373740 (-) 2034 WP_268044178.1 FapA family protein -
  NZD86_RS21880 (NZD86_21900) - 4373734..4374540 (-) 807 WP_268044179.1 PP2C family protein-serine/threonine phosphatase -
  NZD86_RS21885 (NZD86_21905) - 4374630..4374854 (-) 225 WP_268044180.1 STAS domain-containing protein -
  NZD86_RS21890 (NZD86_21910) - 4374930..4375676 (-) 747 WP_268044181.1 EAL domain-containing protein -
  NZD86_RS21895 (NZD86_21915) qstR 4376611..4376772 (+) 162 WP_268046999.1 response regulator transcription factor Regulator
  NZD86_RS21900 (NZD86_21920) - 4376954..4377130 (+) 177 WP_268044182.1 hypothetical protein -
  NZD86_RS21905 (NZD86_21925) - 4377225..4378823 (-) 1599 WP_268044183.1 DUF4855 domain-containing protein -
  NZD86_RS21910 (NZD86_21930) - 4378835..4379482 (-) 648 WP_268044185.1 hypothetical protein -
  NZD86_RS21915 (NZD86_21935) - 4379552..4381081 (-) 1530 WP_268044186.1 peptidoglycan-binding protein -

Sequence

Protein


Download         Length: 53 a.a.        Molecular weight: 6251.27 Da        Isoelectric Point: 12.1578

>NTDB_id=727421 NZD86_RS21895 WP_268046999.1 4376611..4376772(+) (qstR) [Alicyclobacillus dauci strain DSM 28700]
MLSTRERQILDLVRAGRTNGEIARELFISENTVKSHLSRLFKKLGVNRRRDLR

Nucleotide


Download         Length: 162 bp        

>NTDB_id=727421 NZD86_RS21895 WP_268046999.1 4376611..4376772(+) (qstR) [Alicyclobacillus dauci strain DSM 28700]
GTGTTGTCCACAAGGGAACGTCAAATTCTTGATCTCGTTCGCGCTGGAAGGACCAATGGAGAGATCGCACGAGAATTGTT
CATCAGCGAGAATACAGTGAAAAGCCATCTATCGAGGTTATTTAAGAAGTTAGGAGTTAATCGTCGACGGGATTTAAGAT
GA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(2-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

56.25

90.566

0.509
  qstR Vibrio parahaemolyticus RIMD 2210633

52.083

90.566

0.472
  qstR Vibrio campbellii strain DS40M4

52.083

90.566

0.472
  vraR Staphylococcus aureus N315

44.898

92.453

0.415
  degU Bacillus subtilis subsp. subtilis str. 168

42.857

92.453

0.396
  comA Bacillus subtilis subsp. subtilis str. 168

39.216

96.226

0.377