Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   N2A94_RS03965 Genome accession   NZ_CP104048
Coordinates   774440..775114 (-) Length   224 a.a.
NCBI ID   WP_003104260.1    Uniprot ID   A0A0E2UA77
Organism   Streptococcus parauberis strain KSP20     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 769440..780114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A94_RS03940 (N2A94_03940) - 769717..770994 (-) 1278 WP_003102832.1 pyrimidine-nucleoside phosphorylase -
  N2A94_RS03945 (N2A94_03945) - 770981..771580 (-) 600 WP_003103028.1 class I SAM-dependent methyltransferase -
  N2A94_RS03950 (N2A94_03950) coaA 771831..772751 (+) 921 WP_003106953.1 type I pantothenate kinase -
  N2A94_RS03955 (N2A94_03955) rpsT 772820..773053 (+) 234 WP_003105398.1 30S ribosomal protein S20 -
  N2A94_RS03960 (N2A94_03960) ciaH 773143..774447 (-) 1305 WP_045406827.1 cell wall metabolism sensor histidine kinase WalK Regulator
  N2A94_RS03965 (N2A94_03965) ciaR 774440..775114 (-) 675 WP_003104260.1 response regulator transcription factor Regulator
  N2A94_RS03970 (N2A94_03970) - 775232..777769 (-) 2538 WP_003105115.1 M1 family metallopeptidase -
  N2A94_RS03975 (N2A94_03975) phoU 777833..778486 (-) 654 WP_003103398.1 phosphate signaling complex protein PhoU -
  N2A94_RS03980 (N2A94_03980) pstB 778552..779310 (-) 759 WP_003104047.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25767.68 Da        Isoelectric Point: 4.3994

>NTDB_id=727349 N2A94_RS03965 WP_003104260.1 774440..775114(-) (ciaR) [Streptococcus parauberis strain KSP20]
MIKILLVEDDLSLSNSIFDFLDDFADVLQVFDGDEGLYEAESGVYDLILLDLMLPEKDGFQVLKELREKDIHTAVLIMTA
KESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKLMDSSLYYKNLKVDTERNVVTVDEKEVELLGKEFELLVY
FLQNQNVILPKSQIFDRIWGFDSDTTISVVEVYVSKIRKKLKGTKFVADLQTLRSVGYILKTNE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=727349 N2A94_RS03965 WP_003104260.1 774440..775114(-) (ciaR) [Streptococcus parauberis strain KSP20]
ATGATAAAAATATTATTAGTCGAAGATGATTTGAGTTTGTCCAATTCAATATTTGATTTTTTAGATGACTTTGCTGATGT
CTTACAAGTTTTTGATGGTGATGAGGGGCTTTATGAGGCTGAAAGTGGTGTCTATGACTTAATTTTGCTTGATTTAATGC
TTCCAGAAAAAGATGGTTTTCAAGTTTTAAAAGAGCTTAGGGAAAAAGATATTCATACAGCTGTGTTAATTATGACCGCT
AAAGAGAGTCTTGATGATAAAGGTCATGGTTTTGAATTAGGAGCTGATGATTATTTAACTAAGCCGTTTTATCTTGAAGA
ATTGAAGATGCGCATTCAAGCATTACTCAAACGTTCTGGAAAACTGATGGACAGTAGTCTATATTATAAAAATCTAAAAG
TTGATACAGAACGTAATGTCGTTACTGTTGATGAGAAGGAAGTGGAATTACTTGGAAAAGAGTTTGAATTACTTGTTTAT
TTCCTTCAAAATCAAAACGTTATTTTGCCAAAATCACAGATATTTGATCGAATTTGGGGATTTGATAGTGATACAACAAT
TTCAGTCGTAGAAGTTTATGTTTCAAAAATACGAAAAAAATTGAAGGGAACAAAATTTGTTGCTGATTTACAAACTCTTC
GGAGCGTTGGCTACATTTTAAAAACAAATGAATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

86.425

98.661

0.853
  ciaR Streptococcus pneumoniae Rx1

83.71

98.661

0.826
  ciaR Streptococcus pneumoniae D39

83.71

98.661

0.826
  ciaR Streptococcus pneumoniae R6

83.71

98.661

0.826
  ciaR Streptococcus pneumoniae TIGR4

83.71

98.661

0.826
  vicR Streptococcus mutans UA159

35.745

100

0.375
  micA Streptococcus pneumoniae Cp1015

35.47

100

0.371
  covR Lactococcus lactis subsp. lactis strain DGCC12653

36.444

100

0.366