Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NYR52_RS16320 Genome accession   NZ_CP103866
Coordinates   3331645..3332121 (-) Length   158 a.a.
NCBI ID   WP_022737300.1    Uniprot ID   -
Organism   Laceyella sacchari strain FBKL4.014     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3326645..3337121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR52_RS16295 (NYR52_16295) rplI 3327498..3327944 (-) 447 WP_022737305.1 50S ribosomal protein L9 -
  NYR52_RS16300 (NYR52_16300) - 3327941..3329905 (-) 1965 WP_259436047.1 DHH family phosphoesterase -
  NYR52_RS16305 (NYR52_16305) - 3330037..3330942 (-) 906 WP_158283324.1 DUF2232 domain-containing protein -
  NYR52_RS16310 (NYR52_16310) - 3330951..3331262 (-) 312 WP_022737302.1 MazG-like family protein -
  NYR52_RS16315 (NYR52_16315) rpsR 3331376..3331603 (-) 228 WP_132221838.1 30S ribosomal protein S18 -
  NYR52_RS16320 (NYR52_16320) ssbA 3331645..3332121 (-) 477 WP_022737300.1 single-stranded DNA-binding protein Machinery gene
  NYR52_RS16325 (NYR52_16325) rpsF 3332172..3332462 (-) 291 WP_132221840.1 30S ribosomal protein S6 -
  NYR52_RS16330 (NYR52_16330) ychF 3332652..3333752 (-) 1101 WP_022737298.1 redox-regulated ATPase YchF -
  NYR52_RS16335 (NYR52_16335) - 3333782..3333904 (-) 123 WP_259436048.1 hypothetical protein -
  NYR52_RS16340 (NYR52_16340) - 3333941..3334153 (-) 213 WP_022737297.1 DUF951 domain-containing protein -
  NYR52_RS16345 (NYR52_16345) yyaC 3334426..3335016 (+) 591 WP_132221842.1 spore protease YyaC -
  NYR52_RS16350 (NYR52_16350) - 3335085..3336221 (-) 1137 WP_259436049.1 aminotransferase class V-fold PLP-dependent enzyme -
  NYR52_RS16355 (NYR52_16355) - 3336239..3337096 (-) 858 WP_132221846.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17445.22 Da        Isoelectric Point: 4.6723

>NTDB_id=726275 NYR52_RS16320 WP_022737300.1 3331645..3332121(-) (ssbA) [Laceyella sacchari strain FBKL4.014]
MLNRVILVGRLTRDPELRYTASGVAITRFSIAVNRNYTNQQGEREADFINIVTWRGLAENCANYLRKGSLVGVDGRLQTG
KYENQEGRTVYTTDVVAEDVRFLEPKNRSESVSDFGGGSFGGNSYGGGNNKNVGRKPMDDPFADDGQPIDISDDDLPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=726275 NYR52_RS16320 WP_022737300.1 3331645..3332121(-) (ssbA) [Laceyella sacchari strain FBKL4.014]
ATGTTAAATCGGGTCATCTTAGTCGGACGGCTCACCCGTGATCCGGAGTTGCGTTACACAGCCAGCGGAGTGGCGATCAC
ACGCTTTTCCATCGCGGTGAACCGGAATTACACGAACCAGCAAGGGGAACGAGAAGCTGACTTTATCAACATCGTCACGT
GGCGTGGACTGGCTGAGAACTGTGCCAACTACCTGCGAAAAGGCTCTTTGGTTGGAGTCGATGGCCGTTTGCAGACGGGC
AAGTATGAAAACCAAGAAGGGCGCACGGTGTACACCACGGATGTGGTGGCGGAAGACGTCCGTTTCTTGGAGCCGAAAAA
CCGAAGCGAGTCGGTTTCCGATTTCGGCGGAGGTTCATTTGGCGGCAACTCCTACGGTGGAGGAAACAACAAAAACGTTG
GCCGCAAACCGATGGATGATCCCTTTGCTGATGATGGCCAGCCCATTGACATCTCTGATGATGATCTGCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.302

100

0.646
  ssb Latilactobacillus sakei subsp. sakei 23K

53.529

100

0.576
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.856

70.253

0.392
  ssb Neisseria meningitidis MC58

34.857

100

0.386
  ssb Neisseria gonorrhoeae MS11

34.857

100

0.386
  ssb Glaesserella parasuis strain SC1401

33.333

100

0.38