Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NYR87_RS04845 Genome accession   NZ_CP103831
Coordinates   1074985..1076178 (-) Length   397 a.a.
NCBI ID   WP_279481827.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 1812     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1069985..1081178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR87_RS04820 (NYR87_04815) lptE 1071784..1072278 (+) 495 WP_279481823.1 LPS assembly lipoprotein LptE -
  NYR87_RS04825 (NYR87_04820) holA 1072379..1073404 (+) 1026 WP_279481824.1 DNA polymerase III subunit delta -
  NYR87_RS04830 (NYR87_04825) yacG 1073481..1073669 (-) 189 WP_005623139.1 DNA gyrase inhibitor YacG -
  NYR87_RS04835 (NYR87_04830) coaE 1073651..1074289 (-) 639 WP_279443720.1 dephospho-CoA kinase -
  NYR87_RS04840 (NYR87_04835) - 1074311..1074985 (-) 675 WP_279481826.1 prepilin peptidase -
  NYR87_RS04845 (NYR87_04840) pilC 1074985..1076178 (-) 1194 WP_279481827.1 type II secretion system F family protein Machinery gene
  NYR87_RS04850 (NYR87_04845) pilB 1076171..1077556 (-) 1386 WP_279481829.1 GspE/PulE family protein Machinery gene
  NYR87_RS04855 (NYR87_04850) pilA 1077577..1078014 (-) 438 WP_279481831.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR87_RS04860 (NYR87_04855) radA 1078195..1079574 (+) 1380 WP_279481833.1 DNA repair protein RadA Machinery gene
  NYR87_RS04865 (NYR87_04860) pepB 1079640..1080923 (+) 1284 WP_279481950.1 aminopeptidase PepB -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 44890.45 Da        Isoelectric Point: 9.6289

>NTDB_id=725772 NYR87_RS04845 WP_279481827.1 1074985..1076178(-) (pilC) [Actinobacillus equuli subsp. haemolyticus strain 1812]
MVSIFEFHWKAKNRFQQKQSGILLAQNHAEAEQKLLAKGYQDIRIQRNFAFARQPKADEITQFIAQLALLINASIPFKQA
LMMQQENCTNIKLYQWLLALNAAVTSGYSFSASLAKLGCYFSKQEIQLIRIGEQSGKLGTVLDNLAKTRSQSEKLTKKVR
KIMFYPLIVLVISCVLTLGLLVFIVPQFADLYMDKAQNLPWLTSLLFSLSAFLRQNGIFLCCSGIVAMGMLLCFAKKFVN
LTACQMRLLSYIPFFNQVIRYTRIIFFTQNLALMLSAHLHLEAALNAFLSEKMHDRLLQQQVQLTLSLLKQGYKFSEGLN
PAVFTSQVVQMIAIGEKSANLAVMCTQISDIYQLKLDYQIDLLSQLLEPILMLLMGIIIGTVLIGLYLPIFDLGVLV

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=725772 NYR87_RS04845 WP_279481827.1 1074985..1076178(-) (pilC) [Actinobacillus equuli subsp. haemolyticus strain 1812]
ATGGTTAGTATTTTTGAATTTCACTGGAAAGCGAAGAATCGGTTCCAACAAAAACAAAGCGGTATTTTATTAGCCCAAAA
TCATGCTGAGGCAGAGCAAAAGCTCTTGGCAAAAGGCTATCAAGATATTCGTATTCAACGCAATTTTGCTTTTGCTCGAC
AGCCTAAAGCAGATGAAATTACTCAATTTATTGCGCAATTAGCATTATTGATTAACGCTTCCATTCCTTTTAAACAAGCG
TTAATGATGCAGCAGGAAAATTGTACGAATATTAAATTATATCAGTGGCTACTTGCTTTGAATGCTGCTGTGACATCCGG
ATATAGTTTTTCTGCAAGTTTAGCGAAATTAGGGTGTTATTTTTCTAAGCAAGAAATCCAATTAATTCGTATTGGTGAAC
AAAGTGGTAAATTAGGTACTGTTTTGGATAATCTTGCTAAAACACGTAGCCAGTCCGAAAAATTAACGAAAAAAGTTAGA
AAAATTATGTTTTATCCGCTGATTGTGTTAGTCATTTCATGTGTATTGACTCTAGGGCTGTTAGTATTCATTGTGCCTCA
ATTTGCCGACTTATATATGGATAAAGCACAAAATTTACCATGGCTAACGTCATTATTGTTTTCTCTCTCTGCGTTTCTAC
GACAAAATGGGATATTCCTATGCTGTAGCGGTATAGTAGCGATGGGGATGTTGCTCTGTTTTGCAAAAAAATTCGTAAAT
TTGACCGCTTGTCAGATGCGTCTTTTGTCTTATATTCCCTTCTTTAATCAAGTTATTCGCTATACACGAATTATCTTCTT
TACTCAGAATTTGGCGTTAATGTTAAGTGCCCATCTGCATTTAGAGGCTGCCCTAAACGCTTTTTTATCTGAGAAAATGC
ACGATCGACTTTTACAACAACAAGTACAGCTTACGTTATCTTTATTAAAACAGGGGTATAAATTTTCGGAAGGATTAAAC
CCGGCTGTATTCACTTCTCAAGTAGTACAAATGATAGCAATAGGGGAGAAAAGTGCTAATTTAGCGGTGATGTGTACGCA
GATTAGTGATATTTATCAGCTGAAATTAGATTATCAAATAGATTTGCTTTCACAATTACTTGAGCCGATTTTAATGCTAC
TTATGGGGATTATTATTGGCACGGTTTTAATTGGGCTTTATTTGCCGATTTTTGACTTAGGAGTTCTCGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(267-389)

Type II secretion system (T2SS), protein F (T2SSF)

(63-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

48.363

100

0.484
  pilC Haemophilus influenzae Rd KW20

39

100

0.393
  pilC Haemophilus influenzae 86-028NP

38.75

100

0.39