Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NYR87_RS04860 Genome accession   NZ_CP103831
Coordinates   1078195..1079574 (+) Length   459 a.a.
NCBI ID   WP_279481833.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 1812     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1073195..1084574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR87_RS04830 (NYR87_04825) yacG 1073481..1073669 (-) 189 WP_005623139.1 DNA gyrase inhibitor YacG -
  NYR87_RS04835 (NYR87_04830) coaE 1073651..1074289 (-) 639 WP_279443720.1 dephospho-CoA kinase -
  NYR87_RS04840 (NYR87_04835) - 1074311..1074985 (-) 675 WP_279481826.1 prepilin peptidase -
  NYR87_RS04845 (NYR87_04840) pilC 1074985..1076178 (-) 1194 WP_279481827.1 type II secretion system F family protein Machinery gene
  NYR87_RS04850 (NYR87_04845) pilB 1076171..1077556 (-) 1386 WP_279481829.1 GspE/PulE family protein Machinery gene
  NYR87_RS04855 (NYR87_04850) pilA 1077577..1078014 (-) 438 WP_279481831.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR87_RS04860 (NYR87_04855) radA 1078195..1079574 (+) 1380 WP_279481833.1 DNA repair protein RadA Machinery gene
  NYR87_RS04865 (NYR87_04860) pepB 1079640..1080923 (+) 1284 WP_279481950.1 aminopeptidase PepB -
  NYR87_RS04870 (NYR87_04865) - 1081051..1081986 (+) 936 WP_279481835.1 KpsF/GutQ family sugar-phosphate isomerase -
  NYR87_RS04875 (NYR87_04870) greB 1081996..1082484 (+) 489 WP_279481837.1 transcription elongation factor GreB -
  NYR87_RS04880 (NYR87_04875) ribE 1082574..1083035 (-) 462 WP_005600491.1 6,7-dimethyl-8-ribityllumazine synthase -
  NYR87_RS04885 (NYR87_04880) - 1083110..1084315 (-) 1206 WP_279481839.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49742.49 Da        Isoelectric Point: 7.9500

>NTDB_id=725775 NYR87_RS04860 WP_279481833.1 1078195..1079574(+) (radA) [Actinobacillus equuli subsp. haemolyticus strain 1812]
MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNMISEVRLISSKESSKNDRFSGYAGETSGKVQTLSEISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLSKMLPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEH
ICNIADQEKPKLMVIDSIQVMHLSDIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASL
LLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRSDELVSGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVIFGEVG
LAGEIRPVPSGQERISEAAKHGFKRAIVPFSNMPKKPIKDMEVIGVKKLSDALDALGNL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=725775 NYR87_RS04860 WP_279481833.1 1078195..1079574(+) (radA) [Actinobacillus equuli subsp. haemolyticus strain 1812]
ATGGCAAAAGCACCGAAAACGGCTTACGTATGTAATGATTGCGGCGCAGAATATTCTCGCTGGATGGGACAATGCAAAGA
GTGCAAAGCATGGAATATGATTAGTGAAGTTCGCTTAATCTCTAGTAAAGAATCAAGCAAAAATGACCGCTTCAGTGGCT
ATGCTGGAGAGACTTCAGGCAAGGTACAAACACTTTCCGAAATCAGCTTACAAGAAGTGCCTCGTTTTAGTAGTGGGTTT
AATGAGCTTGATCGTGTACTCGGCGGTGGCGTGGTTCCTGGTTCTGCTATTCTCATCGGGGGACATCCTGGTGCAGGAAA
ATCGACACTATTACTGCAAGTGATGTGCGGCTTATCAAAAATGCTACCGACACTCTATGTCACCGGTGAAGAATCATTAC
AACAGGTTGCAATGCGTGCTAATCGTTTAGGGCTACCAACTGATAATCTGAAAATGCTTTCGGAAACATCTGTCGAACAT
ATTTGCAATATTGCCGACCAAGAAAAACCTAAATTAATGGTGATTGACTCCATTCAAGTGATGCATTTATCCGATATTCA
ATCATCGCCCGGCTCCGTTGCTCAAGTACGAGAATGCGCATCATTTCTTACCCGCTATGCCAAAACACGCCAAGTGGCAA
TTATTATGGTCGGTCACGTCACCAAAGACGGTACGCTTGCCGGCCCAAAAGTGTTGGAACACGCTATTGATGCCTCATTA
TTGCTAGAAGGTGAATCTGATTCACGTTTCAGAACATTACGAAGCCAAAAAAACCGATTCGGCGCGGTAAATGAACTTGG
TGTATTTGCTATGACTGAACAAGGTTTGCGAGAAGTTAAAAATCCATCCGCTATTTTTTTAAGCCGTAGTGATGAATTGG
TTTCAGGCAGTTCTGTTATGGTTCTTTGGGAAGGGACTCGTCCGTTATTAGTTGAAATTCAAGCGCTTGTTGATCATTCA
ATGCTTGCAAATCCACGTCGTGTGGCTGTCGGTTTAGATCATAATCGCTTATCGCTCTTACTTGCTGTACTCCACCGCCA
TGGTGGGCTACAAATGTCTGACCAAGATGTTTTTGTTAACGTTGTTGGGGGCGTAAAAGTCACAGAGACCAGTGCCGATC
TCGCTTTAATTTTGGCTCTGATATCAAGTTTTAGAAATCGTCCATTACCACAAGACTTAGTGATCTTTGGTGAAGTAGGG
CTTGCCGGCGAAATTCGTCCGGTGCCGAGTGGTCAAGAACGTATTAGCGAAGCGGCAAAACACGGTTTTAAACGTGCAAT
CGTGCCGTTTAGCAATATGCCGAAAAAACCGATAAAAGATATGGAAGTGATTGGGGTTAAAAAATTAAGTGATGCGCTAG
ATGCACTTGGTAATTTATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-34)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.796

99.564

0.486
  radA Streptococcus mitis NCTC 12261

44.835

99.129

0.444
  radA Streptococcus mitis SK321

44.615

99.129

0.442
  radA Streptococcus pneumoniae Rx1

44.615

99.129

0.442
  radA Streptococcus pneumoniae D39

44.615

99.129

0.442
  radA Streptococcus pneumoniae R6

44.615

99.129

0.442
  radA Streptococcus pneumoniae TIGR4

44.615

99.129

0.442