Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NYR86_RS04825 Genome accession   NZ_CP103830
Coordinates   1097304..1098497 (-) Length   397 a.a.
NCBI ID   WP_279623644.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain 2499     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1092304..1103497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR86_RS04800 (NYR86_04800) lptE 1094096..1094590 (+) 495 WP_278225775.1 LPS assembly lipoprotein LptE -
  NYR86_RS04805 (NYR86_04805) holA 1094698..1095723 (+) 1026 WP_279471321.1 DNA polymerase III subunit delta -
  NYR86_RS04810 (NYR86_04810) yacG 1095800..1095988 (-) 189 WP_005623139.1 DNA gyrase inhibitor YacG -
  NYR86_RS04815 (NYR86_04815) coaE 1095970..1096608 (-) 639 WP_279439093.1 dephospho-CoA kinase -
  NYR86_RS04820 (NYR86_04820) - 1096630..1097304 (-) 675 WP_279623643.1 prepilin peptidase -
  NYR86_RS04825 (NYR86_04825) pilC 1097304..1098497 (-) 1194 WP_279623644.1 type II secretion system F family protein Machinery gene
  NYR86_RS04830 (NYR86_04830) pilB 1098490..1099875 (-) 1386 WP_279623645.1 GspE/PulE family protein Machinery gene
  NYR86_RS04835 (NYR86_04835) pilA 1099896..1100333 (-) 438 WP_279623646.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR86_RS04840 (NYR86_04840) radA 1100514..1101893 (+) 1380 WP_279443725.1 DNA repair protein RadA Machinery gene
  NYR86_RS04845 (NYR86_04845) pepB 1101959..1103245 (+) 1287 WP_279623676.1 aminopeptidase PepB -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 44828.37 Da        Isoelectric Point: 9.7263

>NTDB_id=725745 NYR86_RS04825 WP_279623644.1 1097304..1098497(-) (pilC) [Actinobacillus equuli subsp. equuli strain 2499]
MVSIFEFHWKAKNRFQQKQSGILLAQNHAEAEQKLLAKGYQDIRIQRNFAFARQPKADEITQFIAQLALLINASIPFKQA
LMMQQENCTNIKLYQWLLALNAAVTSGYSFSASLAKLGCYFSKQEIQLIRIGEQSGKLGTVLDNLAKTRSQSEKLTKKVR
KIMFYPLIVLVISCVLTLGLLVFIVPQFADLYLDKAQNLPWLTSLLFSLSAFLRQNGIFLCCSGIVAMGMLLCFAKKFGN
LTACQMRLLSYIPFFNQVIRYIRIIFFTQNLALMLSAHLHLEAALNAFLSEKMHDRLLQQQIRLTLSLLKQGYKFSEGLN
PTVFTSQVVQMIAIGEKSANLAVMCAQISDIYQLKLDYQIDLLSQLLEPVLMLLMGIIIGTVLIGLYLPIFDLGGLV

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=725745 NYR86_RS04825 WP_279623644.1 1097304..1098497(-) (pilC) [Actinobacillus equuli subsp. equuli strain 2499]
ATGGTTAGTATTTTTGAATTTCACTGGAAAGCGAAGAATCGGTTCCAACAAAAACAAAGCGGTATTTTATTAGCCCAAAA
TCATGCTGAGGCAGAGCAAAAGCTCTTGGCAAAAGGCTATCAAGATATTCGTATTCAACGCAATTTTGCTTTTGCTCGAC
AGCCTAAAGCAGATGAAATTACTCAATTTATTGCGCAATTAGCATTATTGATTAACGCTTCCATTCCTTTTAAACAAGCG
TTAATGATGCAGCAGGAAAATTGTACGAATATTAAATTATATCAGTGGCTACTTGCTTTGAATGCTGCTGTGACATCCGG
ATATAGTTTTTCTGCAAGTTTAGCGAAATTAGGGTGTTATTTTTCTAAGCAAGAAATCCAATTAATTCGTATTGGTGAAC
AAAGTGGTAAATTAGGTACTGTTTTGGATAATCTTGCTAAAACACGTAGCCAGTCCGAAAAATTAACGAAAAAAGTTAGA
AAAATTATGTTTTATCCGCTGATTGTGTTAGTCATTTCATGTGTATTGACTCTAGGGCTGTTAGTATTCATTGTGCCTCA
ATTTGCCGACTTATATCTGGATAAAGCACAAAATTTACCATGGCTAACGTCATTATTGTTTTCTCTCTCTGCGTTTCTAC
GACAAAATGGGATATTCCTATGCTGTAGCGGTATAGTAGCGATGGGGATGTTGCTCTGTTTTGCAAAAAAATTCGGAAAT
TTGACCGCTTGTCAGATGCGTCTTTTGTCTTATATTCCCTTCTTTAATCAAGTTATTCGCTATATACGAATTATATTCTT
TACTCAGAATTTGGCGTTAATGTTAAGTGCCCATCTGCATTTAGAGGCTGCCCTAAACGCTTTTTTATCTGAGAAAATGC
ACGATCGACTTTTACAGCAACAAATACGGCTTACATTATCTTTATTAAAACAGGGGTATAAATTTTCGGAAGGATTAAAC
CCGACTGTATTCACTTCTCAAGTAGTACAAATGATAGCAATAGGGGAGAAAAGTGCTAATTTAGCGGTGATGTGTGCGCA
GATTAGTGATATTTATCAGCTGAAATTAGATTATCAAATAGATTTGCTTTCACAATTACTTGAGCCGGTTTTAATGCTAC
TTATGGGTATCATTATTGGTACGGTTTTAATTGGGCTTTATTTGCCGATTTTTGACTTAGGGGGTCTCGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-186)

Type II secretion system (T2SS), protein F (T2SSF)

(267-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

48.363

100

0.484
  pilC Haemophilus influenzae Rd KW20

39

100

0.393
  pilC Haemophilus influenzae 86-028NP

38.75

100

0.39