Detailed information NTG0725748

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: NYR86_RS04840
• Genome accession: NZ_CP103830
• Coordinates: 1100514..1101893 (+)
• Length: 459 a.a.
• NCBI ID: WP_279443725.1
• Uniprot ID: -
• Organism: Actinobacillus equuli subsp. equuli strain 2499
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1095514..1106893

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYR86_RS04810 (NYR86_04810)	yacG	1095800..1095988 (-)	189	WP_005623139.1	DNA gyrase inhibitor YacG	-
NYR86_RS04815 (NYR86_04815)	coaE	1095970..1096608 (-)	639	WP_279439093.1	dephospho-CoA kinase	-
NYR86_RS04820 (NYR86_04820)	-	1096630..1097304 (-)	675	WP_279623643.1	prepilin peptidase	-
NYR86_RS04825 (NYR86_04825)	pilC	1097304..1098497 (-)	1194	WP_279623644.1	type II secretion system F family protein	Machinery gene
NYR86_RS04830 (NYR86_04830)	pilB	1098490..1099875 (-)	1386	WP_279623645.1	GspE/PulE family protein	Machinery gene
NYR86_RS04835 (NYR86_04835)	pilA	1099896..1100333 (-)	438	WP_279623646.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
NYR86_RS04840 (NYR86_04840)	radA	1100514..1101893 (+)	1380	WP_279443725.1	DNA repair protein RadA	Machinery gene
NYR86_RS04845 (NYR86_04845)	pepB	1101959..1103245 (+)	1287	WP_279623676.1	aminopeptidase PepB	-
NYR86_RS04850 (NYR86_04850)	-	1103373..1104308 (+)	936	WP_278225782.1	KpsF/GutQ family sugar-phosphate isomerase	-
NYR86_RS04855 (NYR86_04855)	greB	1104318..1104806 (+)	489	WP_005611555.1	transcription elongation factor GreB	-
NYR86_RS04860 (NYR86_04860)	ribE	1104894..1105355 (-)	462	WP_005600491.1	6,7-dimethyl-8-ribityllumazine synthase	-
NYR86_RS04865 (NYR86_04865)	-	1105466..1106671 (-)	1206	WP_039197148.1	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	-

Sequence

Protein

• Length: 459 a.a.
• Molecular weight: 49712.40 Da
• Isoelectric Point: 7.9500

>NTDB_id=725748 NYR86_RS04840 WP_279443725.1 1100514..1101893(+) (radA) [Actinobacillus equuli subsp. equuli strain 2499]
MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKESSKNDRFSGYAGETSGKVQTLSEISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLSKMLPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEH
ICNIADQEKPKLMVIDSIQVMHLSDIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASL
LLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRSDELVSGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVIFGEVG
LAGEIRPVPSGQERISEAAKHGFKRAIVPFSNMPKKPIKDMEVIGVKKLSDALDALGNL

Nucleotide

• Length: 1380 bp

>NTDB_id=725748 NYR86_RS04840 WP_279443725.1 1100514..1101893(+) (radA) [Actinobacillus equuli subsp. equuli strain 2499]
ATGGCAAAAGCACCGAAAACGGCTTACGTATGTAATGATTGCGGCGCAGAATATTCTCGCTGGATGGGACAATGCAAAGA
GTGCAAAGCATGGAATACGATTAGTGAAGTTCGCTTAATCTCTAGTAAAGAATCAAGCAAAAATGACCGCTTCAGCGGTT
ATGCCGGAGAAACATCAGGCAAGGTACAAACACTTTCCGAAATCAGCTTACAAGAAGTGCCTCGTTTTAGTAGTGGGTTT
AATGAGCTTGATCGTGTACTCGGCGGTGGCGTGGTTCCCGGTTCTGCTATTCTCATCGGGGGACATCCTGGTGCAGGAAA
ATCGACACTATTACTGCAAGTGATGTGCGGCTTATCAAAAATGCTACCGACACTCTATGTCACCGGTGAAGAATCATTAC
AACAGGTTGCAATGCGTGCTAATCGTTTAGGGCTACCAACTGATAATCTGAAAATGCTTTCGGAAACATCTGTCGAACAT
ATTTGCAATATTGCCGACCAAGAAAAACCTAAATTAATGGTAATTGACTCTATTCAAGTGATGCATTTATCCGATATTCA
ATCCTCGCCGGGTTCTGTTGCTCAAGTACGAGAATGTGCATCATTTCTTACCCGCTATGCCAAAACACGCCAAGTGGCAA
TTATTATGGTCGGTCACGTCACCAAAGACGGGACGCTTGCCGGCCCAAAAGTGTTGGAACACGCTATTGATGCCTCATTA
TTGCTAGAAGGTGAATCTGATTCACGTTTCAGAACATTACGAAGCCAAAAAAACCGATTCGGCGCGGTAAATGAACTTGG
TGTGTTTGCTATGACTGAACAAGGTTTGCGAGAAGTTAAAAATCCATCCGCTATTTTTTTAAGCCGTAGTGATGAATTGG
TTTCAGGCAGTTCTGTTATGGTTCTTTGGGAAGGGACTCGTCCGTTATTAGTTGAAATTCAAGCGCTTGTTGATCATTCA
ATGCTTGCAAATCCACGTCGTGTGGCTGTCGGTTTAGATCATAATCGCTTATCGCTCTTACTTGCTGTACTCCACCGCCA
TGGTGGGCTACAAATGTCTGACCAAGATGTTTTTGTTAACGTTGTTGGGGGCGTAAAAGTCACAGAGACCAGTGCCGATC
TTGCTTTAATTTTGGCACTGATCTCAAGTTTTAGAAATCGTCCATTACCACAAGACTTAGTGATCTTTGGTGAAGTAGGG
CTTGCCGGCGAAATCCGTCCGGTGCCGAGTGGTCAAGAACGTATTAGCGAAGCGGCAAAACACGGTTTTAAACGTGCAAT
CGTGCCGTTTAGCAATATGCCGAAAAAACCGATAAAAGATATGGAAGTAATTGGGGTTAAAAAATTAAGTGATGCGCTAG
ATGCACTTGGTAATTTATAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (83-224)

• Subunit ChlI of Mg-chelatase (ChlI) (347-432)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-36)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.015	99.564	0.488
radA	Streptococcus mitis NCTC 12261	44.835	99.129	0.444
radA	Streptococcus pneumoniae Rx1	44.615	99.129	0.442
radA	Streptococcus pneumoniae D39	44.615	99.129	0.442
radA	Streptococcus pneumoniae R6	44.615	99.129	0.442
radA	Streptococcus pneumoniae TIGR4	44.615	99.129	0.442
radA	Streptococcus mitis SK321	44.615	99.129	0.442