Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NYR86_RS04330 Genome accession   NZ_CP103830
Coordinates   971253..971777 (+) Length   174 a.a.
NCBI ID   WP_279623608.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain 2499     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 966253..976777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR86_RS04325 (NYR86_04325) uvrA 968274..971102 (-) 2829 WP_039197049.1 excinuclease ABC subunit UvrA -
  NYR86_RS04330 (NYR86_04330) ssb 971253..971777 (+) 525 WP_279623608.1 single-stranded DNA-binding protein Machinery gene
  NYR86_RS04335 (NYR86_04335) - 971930..972964 (-) 1035 WP_279623609.1 transferrin-binding protein-like solute binding protein -
  NYR86_RS04340 (NYR86_04340) - 973376..974836 (-) 1461 WP_279623610.1 surface lipoprotein assembly modifier -
  NYR86_RS04345 (NYR86_04345) - 975009..976205 (-) 1197 WP_279623611.1 transferrin-binding protein-like solute binding protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19228.02 Da        Isoelectric Point: 4.9839

>NTDB_id=725744 NYR86_RS04330 WP_279623608.1 971253..971777(+) (ssb) [Actinobacillus equuli subsp. equuli strain 2499]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVAGQYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLGGRNQGGDFGGNQGGWGNSAPAPQQSYNQGNSGYGYDQTASRPAPQATKPAQ
AEPPMDNFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=725744 NYR86_RS04330 WP_279623608.1 971253..971777(+) (ssb) [Actinobacillus equuli subsp. equuli strain 2499]
ATGGCAGGTATTAATAAAGTTATCATCGTGGGCAATTTAGGTAACGATCCTGAAATGCGCACTATGCCAAACGGCGAAGC
GGTTGCAAATATTAGCGTAGCAACCAGTGAAAGTTGGACAGATAAAAATACGGGCGAACGTCGTGAAGTAACCGAATGGC
ACCGTATCGTATTCTACCGTCGCCAAGCGGAAGTTGCCGGTCAATACTTACGTAAAGGCTCACAAGTTTATGTTGAAGGC
CGTTTAAAAACACGTAAATGGCAAGATCAAAACGGTCAAGACCGTTACACCACCGAAATCCAAGGTGACGTTTTACAAAT
GTTAGGCGGACGTAACCAAGGTGGTGATTTCGGCGGCAACCAAGGCGGTTGGGGGAATTCAGCGCCTGCACCACAACAAA
GTTACAACCAAGGTAACAGCGGTTACGGCTACGACCAAACAGCAAGCCGTCCTGCTCCGCAAGCAACGAAACCAGCTCAA
GCAGAACCACCTATGGATAACTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

76.796

100

0.799
  ssb Vibrio cholerae strain A1552

58.757

100

0.598
  ssb Neisseria meningitidis MC58

48

100

0.483
  ssb Neisseria gonorrhoeae MS11

48

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36

100

0.362
  ssb Latilactobacillus sakei subsp. sakei 23K

34.615

100

0.362