Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NYR83_RS04265 Genome accession   NZ_CP103828
Coordinates   958086..958610 (+) Length   174 a.a.
NCBI ID   WP_039195080.1    Uniprot ID   A0A9X4G3K2
Organism   Actinobacillus equuli subsp. equuli strain 3009     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 953086..963610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR83_RS04260 (NYR83_04260) uvrA 955107..957935 (-) 2829 WP_279443673.1 excinuclease ABC subunit UvrA -
  NYR83_RS04265 (NYR83_04265) ssb 958086..958610 (+) 525 WP_039195080.1 single-stranded DNA-binding protein Machinery gene
  NYR83_RS04270 (NYR83_04270) - 958820..959719 (-) 900 WP_279443674.1 LysR family transcriptional regulator -
  NYR83_RS04275 (NYR83_04275) - 959850..960863 (+) 1014 WP_279443675.1 MBL fold metallo-hydrolase -
  NYR83_RS04280 (NYR83_04280) - 961071..962060 (+) 990 WP_279443676.1 zinc-dependent alcohol dehydrogenase family protein -
  NYR83_RS04285 (NYR83_04285) - 962430..963317 (-) 888 WP_279443677.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19229.01 Da        Isoelectric Point: 4.9839

>NTDB_id=725692 NYR83_RS04265 WP_039195080.1 958086..958610(+) (ssb) [Actinobacillus equuli subsp. equuli strain 3009]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVAGQYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLGGRNQGGDFGGNQGGWGNSAPAPQQSYNQGNSGYGYDQTASRPAQQAAKPAQ
AEPPMDNFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=725692 NYR83_RS04265 WP_039195080.1 958086..958610(+) (ssb) [Actinobacillus equuli subsp. equuli strain 3009]
ATGGCAGGTATTAATAAAGTTATCATTGTGGGCAATTTAGGTAACGATCCTGAAATGCGCACCATGCCAAACGGCGAAGC
GGTTGCAAATATTAGCGTAGCAACCAGTGAAAGTTGGACAGATAAAAATACGGGCGAACGCCGTGAAGTAACCGAATGGC
ACCGTATCGTATTCTACCGTCGCCAAGCGGAAGTTGCCGGTCAATACTTACGTAAAGGCTCACAAGTTTATGTTGAAGGC
CGTTTAAAAACACGTAAATGGCAAGACCAAAACGGTCAAGATCGTTACACCACCGAAATCCAAGGTGACGTTTTACAAAT
GTTAGGCGGACGTAACCAAGGCGGCGATTTCGGCGGCAACCAAGGCGGTTGGGGAAATTCAGCGCCTGCACCACAACAAA
GTTACAACCAAGGTAACAGCGGTTACGGTTATGACCAAACAGCAAGCCGCCCTGCTCAACAAGCTGCAAAACCAGCTCAA
GCAGAACCACCAATGGATAACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

78.022

100

0.816
  ssb Vibrio cholerae strain A1552

58.757

100

0.598
  ssb Neisseria meningitidis MC58

48

100

0.483
  ssb Neisseria gonorrhoeae MS11

48

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.143

100

0.374
  ssb Latilactobacillus sakei subsp. sakei 23K

34.615

100

0.362