Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NYR82_RS02755 Genome accession   NZ_CP103827
Coordinates   600216..600740 (-) Length   174 a.a.
NCBI ID   WP_279442415.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3090     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 595216..605740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR82_RS11165 - 596065..597053 (-) 989 Protein_529 zinc-dependent alcohol dehydrogenase family protein -
  NYR82_RS02735 (NYR82_02740) - 597261..597923 (-) 663 WP_279442411.1 MBL fold metallo-hydrolase -
  NYR82_RS02740 (NYR82_02745) - 597892..598275 (-) 384 WP_279442412.1 hypothetical protein -
  NYR82_RS02745 (NYR82_02750) - 598406..599305 (+) 900 WP_279442413.1 LysR family transcriptional regulator -
  NYR82_RS02750 (NYR82_02755) - 599345..600163 (+) 819 WP_279442414.1 GIY-YIG nuclease family protein -
  NYR82_RS02755 (NYR82_02760) ssb 600216..600740 (-) 525 WP_279442415.1 single-stranded DNA-binding protein Machinery gene
  NYR82_RS02760 (NYR82_02765) uvrA 600891..603719 (+) 2829 WP_279442416.1 excinuclease ABC subunit UvrA -
  NYR82_RS02765 (NYR82_02770) - 603794..604087 (-) 294 WP_039197046.1 hypothetical protein -
  NYR82_RS02770 (NYR82_02775) - 604096..604380 (-) 285 WP_039197045.1 hypothetical protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19259.04 Da        Isoelectric Point: 4.9839

>NTDB_id=725668 NYR82_RS02755 WP_279442415.1 600216..600740(-) (ssb) [Actinobacillus equuli subsp. haemolyticus strain 3090]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVAGQYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLGGRNQGGDFGGNQGGWGNSAPAPQQSYNQGNSGYGYDQTASRPAQQAAKPTQ
AEPPMDNFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=725668 NYR82_RS02755 WP_279442415.1 600216..600740(-) (ssb) [Actinobacillus equuli subsp. haemolyticus strain 3090]
ATGGCAGGTATTAATAAAGTTATCATCGTGGGCAATTTAGGTAACGATCCTGAAATGCGCACGATGCCAAACGGCGAAGC
GGTTGCAAATATTAGCGTAGCAACCAGTGAAAGTTGGACAGATAAAAATACGGGCGAACGCCGTGAAGTAACCGAATGGC
ACCGTATCGTATTCTACCGTCGCCAAGCGGAAGTTGCCGGTCAATACTTACGTAAAGGCTCACAAGTTTATGTTGAAGGC
CGTTTAAAAACACGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACCGAAATCCAAGGTGACGTTTTACAAAT
GTTAGGCGGACGTAATCAAGGTGGCGATTTCGGCGGCAACCAAGGCGGTTGGGGAAATTCAGCGCCTGCACCACAACAAA
GTTACAACCAAGGTAACAGCGGTTACGGCTACGACCAAACAGCAAGCCGTCCTGCTCAACAAGCAGCGAAACCGACTCAA
GCAGAACCACCTATGGATAACTTCGACGACGATATTCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

77.473

100

0.81
  ssb Vibrio cholerae strain A1552

58.757

100

0.598
  ssb Neisseria meningitidis MC58

48

100

0.483
  ssb Neisseria gonorrhoeae MS11

48

100

0.483
  ssb Latilactobacillus sakei subsp. sakei 23K

35.165

100

0.368
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.368