Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   NYR81_RS10870 Genome accession   NZ_CP103826
Coordinates   2301403..2301693 (+) Length   96 a.a.
NCBI ID   WP_039198813.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3113     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2296403..2306693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR81_RS10850 (NYR81_10850) rsmI 2297557..2298411 (+) 855 WP_279442033.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NYR81_RS10855 (NYR81_10855) - 2298455..2299024 (-) 570 WP_039198809.1 elongation factor P hydroxylase -
  NYR81_RS10860 (NYR81_10860) - 2299084..2300833 (-) 1750 Protein_2078 protein-disulfide reductase DsbD -
  NYR81_RS10865 (NYR81_10865) - 2301051..2301422 (+) 372 WP_005621659.1 type II toxin-antitoxin system RelE/ParE family toxin -
  NYR81_RS10870 (NYR81_10870) HI0659 2301403..2301693 (+) 291 WP_039198813.1 helix-turn-helix transcriptional regulator Machinery gene
  NYR81_RS10875 (NYR81_10875) - 2301761..2302723 (-) 963 WP_279442035.1 calcium/sodium antiporter -
  NYR81_RS10880 (NYR81_10880) - 2302796..2303293 (+) 498 WP_015674483.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  NYR81_RS10885 (NYR81_10885) artP 2303516..2304250 (+) 735 WP_279442036.1 arginine ABC transporter ATP-binding protein ArtP -
  NYR81_RS10890 (NYR81_10890) - 2304271..2304990 (+) 720 WP_279442037.1 transporter substrate-binding domain-containing protein -
  NYR81_RS10895 (NYR81_10895) artQ 2304996..2305667 (+) 672 WP_015674486.1 arginine ABC transporter permease ArtQ -
  NYR81_RS10900 (NYR81_10900) artM 2305667..2306350 (+) 684 WP_279442038.1 arginine ABC transporter permease ArtM -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10821.59 Da        Isoelectric Point: 8.7275

>NTDB_id=725660 NYR81_RS10870 WP_039198813.1 2301403..2301693(+) (HI0659) [Actinobacillus equuli subsp. haemolyticus strain 3113]
MSPIGSSWTSFEREVFNELEMEENHFRVKLILEIIETRQALGISQRKLEKLSGVKQSMIARIEKGSSNPSLGTLLKLLVP
LGKTLQIVSLDETHSK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=725660 NYR81_RS10870 WP_039198813.1 2301403..2301693(+) (HI0659) [Actinobacillus equuli subsp. haemolyticus strain 3113]
ATGAGCCCCATTGGTTCTAGTTGGACATCATTTGAACGAGAGGTGTTTAATGAGTTAGAAATGGAAGAAAACCATTTCCG
CGTTAAATTAATTCTTGAAATCATTGAAACCCGACAAGCACTAGGCATTTCACAGCGTAAATTAGAAAAACTAAGCGGCG
TTAAACAATCTATGATTGCTCGCATTGAAAAGGGAAGTTCCAATCCTTCTCTTGGTACGTTACTGAAGTTACTGGTGCCT
TTGGGGAAAACATTACAAATTGTCTCTTTAGACGAAACTCATTCTAAATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(35-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

65.556

93.75

0.615