Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NYR81_RS03010 Genome accession   NZ_CP103826
Coordinates   657776..658213 (+) Length   145 a.a.
NCBI ID   WP_279442711.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3113     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 652776..663213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR81_RS02990 (NYR81_02990) greB 653302..653790 (-) 489 WP_005611555.1 transcription elongation factor GreB -
  NYR81_RS02995 (NYR81_02995) - 653800..654735 (-) 936 WP_279442713.1 KpsF/GutQ family sugar-phosphate isomerase -
  NYR81_RS03000 (NYR81_03000) pepB 654863..656149 (-) 1287 WP_279479825.1 aminopeptidase PepB -
  NYR81_RS03005 (NYR81_03005) radA 656215..657595 (-) 1381 Protein_575 DNA repair protein RadA -
  NYR81_RS03010 (NYR81_03010) pilA 657776..658213 (+) 438 WP_279442711.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR81_RS03015 (NYR81_03015) pilB 658234..659619 (+) 1386 WP_279479637.1 GspE/PulE family protein Machinery gene
  NYR81_RS03020 (NYR81_03020) pilC 659612..660805 (+) 1194 WP_279442709.1 type II secretion system F family protein Machinery gene
  NYR81_RS03025 (NYR81_03025) - 660805..661479 (+) 675 WP_279442708.1 prepilin peptidase -
  NYR81_RS03030 (NYR81_03030) coaE 661501..662139 (+) 639 WP_279442707.1 dephospho-CoA kinase -
  NYR81_RS03035 (NYR81_03035) yacG 662121..662309 (+) 189 WP_115589824.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15528.86 Da        Isoelectric Point: 7.5779

>NTDB_id=725647 NYR81_RS03010 WP_279442711.1 657776..658213(+) (pilA) [Actinobacillus equuli subsp. haemolyticus strain 3113]
MKFVFKPIQQAFTLIELMIVIAIIAILATVAIPSYNNYTKKAALSELLAASSAYKTDVEICIYNTGEVKNCSSGTNGIKN
GDDIKNSKYLASISVASGVITVKGKGSVDGYGYTLTPDYSNKTLTWETACLGEDTSLFPAAFCSR

Nucleotide


Download         Length: 438 bp        

>NTDB_id=725647 NYR81_RS03010 WP_279442711.1 657776..658213(+) (pilA) [Actinobacillus equuli subsp. haemolyticus strain 3113]
ATGAAATTCGTATTCAAGCCTATACAGCAGGCATTTACTCTGATTGAATTAATGATTGTAATTGCAATCATTGCTATTTT
GGCAACGGTAGCCATTCCTTCTTATAACAATTACACCAAAAAGGCGGCATTATCCGAACTGTTAGCGGCATCTTCCGCTT
ATAAAACAGATGTGGAAATTTGTATTTATAACACGGGAGAGGTAAAAAACTGTTCTAGCGGAACGAATGGTATCAAAAAT
GGTGACGATATTAAAAACTCTAAGTATTTAGCCTCTATTTCTGTAGCTTCCGGTGTAATAACTGTGAAGGGGAAAGGGAG
TGTAGATGGGTATGGATATACGCTTACACCGGATTATTCAAATAAAACGCTAACTTGGGAGACAGCTTGTTTAGGCGAGG
ATACTAGTTTATTCCCTGCCGCGTTCTGTTCGAGATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(41-128)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Glaesserella parasuis strain SC1401

65.517

100

0.655
  pilA Haemophilus influenzae Rd KW20

56.164

100

0.566
  pilA Haemophilus influenzae 86-028NP

56.429

96.552

0.545
  pilA Vibrio campbellii strain DS40M4

37.589

97.241

0.366