Detailed information NTG0725649

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: NYR81_RS03020
• Genome accession: NZ_CP103826
• Coordinates: 659612..660805 (+)
• Length: 397 a.a.
• NCBI ID: WP_279442709.1
• Uniprot ID: -
• Organism: Actinobacillus equuli subsp. haemolyticus strain 3113
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 654612..665805

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYR81_RS03000 (NYR81_03000)	pepB	654863..656149 (-)	1287	WP_279479825.1	aminopeptidase PepB	-
NYR81_RS03005 (NYR81_03005)	radA	656215..657595 (-)	1381	Protein_575	DNA repair protein RadA	-
NYR81_RS03010 (NYR81_03010)	pilA	657776..658213 (+)	438	WP_279442711.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
NYR81_RS03015 (NYR81_03015)	pilB	658234..659619 (+)	1386	WP_279479637.1	GspE/PulE family protein	Machinery gene
NYR81_RS03020 (NYR81_03020)	pilC	659612..660805 (+)	1194	WP_279442709.1	type II secretion system F family protein	Machinery gene
NYR81_RS03025 (NYR81_03025)	-	660805..661479 (+)	675	WP_279442708.1	prepilin peptidase	-
NYR81_RS03030 (NYR81_03030)	coaE	661501..662139 (+)	639	WP_279442707.1	dephospho-CoA kinase	-
NYR81_RS03035 (NYR81_03035)	yacG	662121..662309 (+)	189	WP_115589824.1	DNA gyrase inhibitor YacG	-
NYR81_RS03040 (NYR81_03040)	holA	662386..663411 (-)	1026	WP_279442706.1	DNA polymerase III subunit delta	-
NYR81_RS03045 (NYR81_03045)	lptE	663519..664013 (-)	495	WP_279442705.1	LPS assembly lipoprotein LptE	-

Sequence

Protein

• Length: 397 a.a.
• Molecular weight: 44849.40 Da
• Isoelectric Point: 9.6289

>NTDB_id=725649 NYR81_RS03020 WP_279442709.1 659612..660805(+) (pilC) [Actinobacillus equuli subsp. haemolyticus strain 3113]
MVSIFEFHWKAKNRFQQKQSGILLAQNHAEAEQKLLAKGYQDIRIQRNFAFARQPKADEITQFIAQLALLINASIPFKQA
LMMQQENCTNIKLYQWLLALNAAVTSGYSFSASLAKLGCYFSKQEIQLIRIGEQSGKLGTVLDNLAKTRSQSEKLTKKVR
KIMFYPLIVLVISCVLTLGLLVFIVPQFADLYMDKAQNLPWLTSLLFSLSAFLRQNGIFLCCSGIVAMGMLLCFAKKFGN
LTACQMRLLSYIPFFNQVIRYTRIIFFTQSLALMLSAHLHLEVALNAFLSEKMHDRLLQQQVQLTLSLLKQGYKFSEGLN
PAVFTSQVVQMIAIGEKSANLAVMCTQISDIYQLKLDYQIDLLSQLLEPILMLLMGIIIGTVLIGLYLPIFDLGVLV

Nucleotide

• Length: 1194 bp

>NTDB_id=725649 NYR81_RS03020 WP_279442709.1 659612..660805(+) (pilC) [Actinobacillus equuli subsp. haemolyticus strain 3113]
ATGGTTAGTATTTTTGAATTTCACTGGAAAGCGAAGAATCGGTTCCAACAAAAACAAAGCGGTATTTTATTAGCCCAAAA
TCATGCTGAGGCAGAGCAAAAGCTCTTGGCAAAAGGCTATCAAGATATTCGTATTCAACGCAATTTTGCTTTTGCTCGAC
AGCCTAAAGCAGATGAAATTACTCAATTTATTGCGCAATTAGCATTATTGATTAACGCTTCCATTCCTTTTAAACAAGCG
TTAATGATGCAGCAGGAAAATTGTACGAATATTAAATTATATCAGTGGCTACTTGCTTTGAATGCTGCTGTGACATCCGG
ATATAGTTTTTCTGCAAGTTTAGCGAAATTAGGGTGTTATTTTTCTAAGCAAGAAATCCAATTAATTCGTATTGGTGAAC
AAAGTGGTAAATTAGGTACTGTTTTGGATAATCTTGCTAAAACACGTAGCCAGTCCGAAAAATTAACGAAAAAAGTTAGA
AAAATTATGTTTTATCCGCTGATTGTGTTAGTCATTTCATGTGTATTGACTCTAGGGCTGTTAGTATTCATTGTGCCTCA
ATTTGCCGACTTATATATGGATAAAGCACAAAATTTACCATGGCTAACGTCATTATTGTTTTCTCTCTCTGCGTTTCTAC
GACAAAATGGGATATTCCTATGCTGTAGCGGTATAGTAGCAATGGGGATGTTGCTCTGTTTTGCAAAAAAATTCGGAAAT
TTGACCGCTTGTCAGATGCGTCTTTTGTCTTATATTCCCTTCTTTAATCAAGTTATTCGCTATACACGAATTATATTCTT
TACTCAGAGTTTGGCGTTAATGTTAAGTGCCCATCTGCATTTAGAGGTTGCCCTAAACGCTTTTTTATCTGAGAAAATGC
ACGATCGACTTTTACAACAACAAGTACAGCTTACGTTATCTTTATTAAAACAGGGGTATAAATTTTCGGAAGGATTAAAC
CCGGCTGTATTCACTTCGCAAGTAGTACAAATGATAGCAATAGGGGAGAAAAGTGCTAATTTAGCGGTGATGTGTACGCA
GATTAGCGATATTTATCAGCTGAAATTAGATTATCAAATAGATTTGCTTTCACAATTACTTGAGCCGATTTTAATGCTAC
TTATGGGGATTATTATTGGCACGGTTTTAATTGGGCTTTATTTGCCGATTTTTGACTTAGGGGTTCTCGTATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (267-389)

• Type II secretion system (T2SS), protein F (T2SSF) (63-186)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Glaesserella parasuis strain SC1401	48.111	100	0.481
pilC	Haemophilus influenzae Rd KW20	39.25	100	0.395
pilC	Haemophilus influenzae 86-028NP	39	100	0.393