Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NYR79_RS06825 Genome accession   NZ_CP103824
Coordinates   1464956..1465480 (-) Length   174 a.a.
NCBI ID   WP_279454593.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3524     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1459956..1470480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR79_RS06810 (NYR79_06810) - 1461507..1462496 (-) 990 WP_279454590.1 zinc-dependent alcohol dehydrogenase family protein -
  NYR79_RS06815 (NYR79_06815) - 1462703..1463716 (-) 1014 WP_081578001.1 MBL fold metallo-hydrolase -
  NYR79_RS06820 (NYR79_06820) - 1463847..1464746 (+) 900 WP_279454592.1 LysR family transcriptional regulator -
  NYR79_RS06825 (NYR79_06825) ssb 1464956..1465480 (-) 525 WP_279454593.1 single-stranded DNA-binding protein Machinery gene
  NYR79_RS06830 (NYR79_06830) uvrA 1465631..1468459 (+) 2829 WP_279454594.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19170.97 Da        Isoelectric Point: 4.9839

>NTDB_id=725603 NYR79_RS06825 WP_279454593.1 1464956..1465480(-) (ssb) [Actinobacillus equuli subsp. haemolyticus strain 3524]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANVSVATSESWTDKNTGERREVTEWHRIVFYRRQAEVAGQYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLGGRTQGGDFGGNQGGWGNSAPAPQQSYNQGNSGYGYDQTASRPAPQAAKPAQ
AEPPMDNFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=725603 NYR79_RS06825 WP_279454593.1 1464956..1465480(-) (ssb) [Actinobacillus equuli subsp. haemolyticus strain 3524]
ATGGCAGGTATTAATAAAGTTATCATCGTGGGCAATTTAGGTAACGATCCTGAAATGCGCACTATGCCAAACGGCGAAGC
GGTTGCAAATGTTAGCGTAGCAACCAGTGAAAGTTGGACAGATAAAAATACGGGCGAACGCCGTGAAGTAACCGAATGGC
ACCGTATCGTATTCTACCGTCGCCAAGCGGAAGTTGCCGGTCAATACTTACGTAAAGGCTCACAAGTTTATGTTGAAGGC
CGTTTAAAAACACGTAAATGGCAAGACCAAAACGGTCAAGACCGTTACACCACCGAAATCCAAGGTGACGTTTTACAAAT
GTTAGGCGGACGTACCCAAGGTGGTGATTTCGGCGGCAACCAAGGCGGTTGGGGGAATTCAGCGCCTGCACCACAACAAA
GTTACAACCAAGGTAACAGCGGTTACGGCTACGACCAAACAGCAAGTCGCCCTGCTCCGCAAGCAGCGAAACCAGCTCAA
GCAGAACCACCTATGGATAACTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

76.796

100

0.799
  ssb Vibrio cholerae strain A1552

58.192

100

0.592
  ssb Neisseria meningitidis MC58

47.429

100

0.477
  ssb Neisseria gonorrhoeae MS11

47.429

100

0.477
  ssbA Bacillus subtilis subsp. subtilis str. 168

34.359

100

0.385
  ssb Latilactobacillus sakei subsp. sakei 23K

35.165

100

0.368