Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NYR79_RS06295 Genome accession   NZ_CP103824
Coordinates   1335630..1336823 (+) Length   397 a.a.
NCBI ID   WP_279454529.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3524     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1330630..1341823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR79_RS06275 (NYR79_06275) pepB 1330882..1332168 (-) 1287 WP_279455506.1 aminopeptidase PepB -
  NYR79_RS06280 (NYR79_06280) radA 1332234..1333613 (-) 1380 WP_279443725.1 DNA repair protein RadA Machinery gene
  NYR79_RS06285 (NYR79_06285) pilA 1333794..1334231 (+) 438 WP_279454527.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR79_RS06290 (NYR79_06290) pilB 1334252..1335637 (+) 1386 WP_279454528.1 GspE/PulE family protein Machinery gene
  NYR79_RS06295 (NYR79_06295) pilC 1335630..1336823 (+) 1194 WP_279454529.1 type II secretion system F family protein Machinery gene
  NYR79_RS06300 (NYR79_06300) - 1336823..1337497 (+) 675 WP_039197142.1 fimbrial protein -
  NYR79_RS06305 (NYR79_06305) coaE 1337519..1338157 (+) 639 WP_279454029.1 dephospho-CoA kinase -
  NYR79_RS06310 (NYR79_06310) yacG 1338139..1338327 (+) 189 WP_005623139.1 DNA gyrase inhibitor YacG -
  NYR79_RS06315 (NYR79_06315) holA 1338404..1339429 (-) 1026 WP_279454530.1 DNA polymerase III subunit delta -
  NYR79_RS06320 (NYR79_06320) lptE 1339537..1340031 (-) 495 WP_278225775.1 LPS assembly lipoprotein LptE -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 44864.37 Da        Isoelectric Point: 9.6289

>NTDB_id=725602 NYR79_RS06295 WP_279454529.1 1335630..1336823(+) (pilC) [Actinobacillus equuli subsp. haemolyticus strain 3524]
MVSIFEFHWKAKNRFQQKQSGILLAQNHAEAEQKLLAKGYQDIRIQRNFAFARQPKADETTQFIAQLALLINASIPFKQA
LMMQQENCTNIKLYQWLLALNAAVTSGYSFSASLAKLGCYFSKQEIQLIRIGEQSGKLGTVLDNLAKTRSQSEKLTKKVR
KIMFYPLIVLVISCVLTLGLLVFIVPQFADLYMDKAQNLPWLTSLLFSLSAFLRQNGIFLCCSGIVAMGMLLCFAKKFGN
LTACQMRLLSYIPFFNQVIRYTRIIFFTQNLALMLSAHLHLEVALNAFLSEKMHDRLLQQQVQLTLSLLKQGYKFSEGLN
PAVFTSQVVQMIAIGEKSANLAVMCTQISDIYQLKLDYQIDLLSQLLEPILMLLMGIIIGTVLIGLYLPIFDLGVLV

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=725602 NYR79_RS06295 WP_279454529.1 1335630..1336823(+) (pilC) [Actinobacillus equuli subsp. haemolyticus strain 3524]
ATGGTTAGTATTTTTGAATTTCACTGGAAAGCGAAGAATCGGTTCCAACAAAAACAAAGCGGTATTTTATTAGCCCAAAA
TCATGCTGAGGCAGAGCAAAAGCTCTTGGCAAAAGGCTATCAAGATATTCGTATTCAACGCAATTTTGCTTTTGCTCGAC
AGCCTAAAGCAGATGAAACTACTCAATTTATTGCGCAATTAGCATTATTGATTAACGCTTCCATTCCTTTTAAACAAGCG
TTAATGATGCAGCAGGAAAATTGTACGAATATTAAATTATATCAGTGGCTACTTGCTTTGAATGCTGCTGTGACATCCGG
ATATAGTTTTTCTGCAAGTTTAGCGAAATTAGGGTGTTATTTTTCTAAGCAAGAAATCCAATTAATTCGTATTGGTGAAC
AAAGTGGTAAATTAGGTACTGTTTTGGATAATCTTGCTAAAACACGTAGCCAGTCCGAAAAATTAACGAAAAAAGTTAGA
AAAATTATGTTTTATCCGCTGATTGTGTTAGTCATTTCATGTGTATTGACTCTAGGGCTGTTAGTATTCATTGTGCCTCA
ATTTGCCGACTTATATATGGATAAAGCACAAAATTTACCATGGCTAACGTCATTATTGTTTTCTCTCTCTGCGTTTCTAC
GACAAAATGGGATATTCCTATGCTGTAGCGGTATAGTAGCGATGGGGATGTTGCTCTGTTTTGCAAAAAAATTCGGAAAT
TTGACCGCTTGTCAGATGCGTCTTTTGTCTTATATTCCCTTCTTTAATCAAGTTATTCGCTATACACGAATTATATTCTT
TACTCAGAATTTGGCGTTAATGTTAAGTGCCCATCTGCATTTAGAGGTTGCCCTAAACGCTTTTTTATCTGAGAAAATGC
ACGATCGACTTTTACAACAACAAGTACAGCTTACGTTATCTTTATTAAAACAGGGGTATAAATTTTCGGAAGGATTAAAC
CCGGCTGTATTCACTTCGCAAGTAGTACAAATGATAGCAATAGGGGAGAAAAGTGCTAATTTAGCGGTGATGTGTACGCA
GATTAGCGATATTTATCAGCTGAAATTAGATTATCAAATAGATTTGCTTTCACAATTACTTGAGCCGATTTTAATGTTAC
TTATGGGGATTATTATTGGCACGGTTTTAATTGGGCTTTATTTGCCGATTTTTGATTTAGGGGTTCTCGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-186)

Type II secretion system (T2SS), protein F (T2SSF)

(267-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

48.111

100

0.481
  pilC Haemophilus influenzae Rd KW20

38.75

100

0.39
  pilC Haemophilus influenzae 86-028NP

38.5

100

0.388