Detailed information NTG0725599

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: NYR79_RS06280
• Genome accession: NZ_CP103824
• Coordinates: 1332234..1333613 (-)
• Length: 459 a.a.
• NCBI ID: WP_279443725.1
• Uniprot ID: -
• Organism: Actinobacillus equuli subsp. haemolyticus strain 3524
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1327234..1338613

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYR79_RS06255 (NYR79_06255)	-	1327454..1328659 (+)	1206	WP_279454526.1	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	-
NYR79_RS06260 (NYR79_06260)	ribE	1328770..1329231 (+)	462	WP_005600491.1	6,7-dimethyl-8-ribityllumazine synthase	-
NYR79_RS06265 (NYR79_06265)	greB	1329321..1329809 (-)	489	WP_005611555.1	transcription elongation factor GreB	-
NYR79_RS06270 (NYR79_06270)	-	1329819..1330754 (-)	936	WP_278225782.1	KpsF/GutQ family sugar-phosphate isomerase	-
NYR79_RS06275 (NYR79_06275)	pepB	1330882..1332168 (-)	1287	WP_279455506.1	aminopeptidase PepB	-
NYR79_RS06280 (NYR79_06280)	radA	1332234..1333613 (-)	1380	WP_279443725.1	DNA repair protein RadA	Machinery gene
NYR79_RS06285 (NYR79_06285)	pilA	1333794..1334231 (+)	438	WP_279454527.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
NYR79_RS06290 (NYR79_06290)	pilB	1334252..1335637 (+)	1386	WP_279454528.1	GspE/PulE family protein	Machinery gene
NYR79_RS06295 (NYR79_06295)	pilC	1335630..1336823 (+)	1194	WP_279454529.1	type II secretion system F family protein	Machinery gene
NYR79_RS06300 (NYR79_06300)	-	1336823..1337497 (+)	675	WP_039197142.1	fimbrial protein	-
NYR79_RS06305 (NYR79_06305)	coaE	1337519..1338157 (+)	639	WP_279454029.1	dephospho-CoA kinase	-
NYR79_RS06310 (NYR79_06310)	yacG	1338139..1338327 (+)	189	WP_005623139.1	DNA gyrase inhibitor YacG	-

Sequence

Protein

• Length: 459 a.a.
• Molecular weight: 49712.40 Da
• Isoelectric Point: 7.9500

>NTDB_id=725599 NYR79_RS06280 WP_279443725.1 1332234..1333613(-) (radA) [Actinobacillus equuli subsp. haemolyticus strain 3524]
MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKESSKNDRFSGYAGETSGKVQTLSEISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLSKMLPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEH
ICNIADQEKPKLMVIDSIQVMHLSDIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASL
LLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRSDELVSGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVIFGEVG
LAGEIRPVPSGQERISEAAKHGFKRAIVPFSNMPKKPIKDMEVIGVKKLSDALDALGNL

Nucleotide

• Length: 1380 bp

>NTDB_id=725599 NYR79_RS06280 WP_279443725.1 1332234..1333613(-) (radA) [Actinobacillus equuli subsp. haemolyticus strain 3524]
ATGGCAAAAGCACCAAAAACGGCTTACGTATGTAATGATTGTGGCGCAGAATATTCTCGCTGGATGGGTCAATGCAAAGA
GTGCAAAGCATGGAATACGATTAGTGAAGTTCGCTTAATCTCTAGTAAAGAATCAAGCAAAAATGACCGCTTCAGTGGCT
ATGCTGGAGAGACTTCAGGCAAGGTACAAACACTTTCCGAAATCAGCTTACAAGAAGTGCCTCGTTTTAGTAGTGGGTTT
AATGAGCTTGATCGCGTACTCGGCGGTGGCGTGGTGCCCGGTTCTGCTATTCTTATCGGGGGACATCCCGGTGCGGGAAA
ATCGACACTATTACTGCAAGTGATGTGTGGTTTATCAAAAATGCTGCCAACACTCTATGTCACAGGCGAAGAATCATTAC
AACAGGTTGCAATGCGTGCTAATCGTTTAGGGCTACCAACCGATAATCTAAAAATGCTTTCGGAAACATCTGTCGAACAT
ATTTGTAATATTGCCGACCAAGAAAAACCTAAATTAATGGTGATTGACTCCATTCAAGTGATGCATTTATCCGATATTCA
ATCCTCGCCCGGTTCTGTTGCTCAAGTGCGAGAATGCGCGTCATTTCTCACTCGCTATGCAAAAACACGCCAAGTGGCAA
TTATTATGGTCGGTCACGTCACCAAAGACGGTACGCTTGCCGGTCCAAAAGTGTTAGAGCACGCTATTGATGCCTCATTA
TTGCTAGAAGGTGAATCCGACTCACGATTCAGAACGCTGCGAAGCCAAAAAAACCGATTCGGTGCGGTAAATGAACTTGG
CGTGTTTGCTATGACTGAACAAGGTTTACGAGAAGTTAAAAACCCCTCTGCAATTTTTCTAAGCCGTAGTGATGAATTAG
TTTCAGGCAGTTCCGTTATGGTGCTTTGGGAAGGAACTCGCCCGTTATTAGTCGAAATTCAAGCACTCGTTGATCATTCG
ATGCTCGCAAATCCACGCCGTGTGGCGGTCGGTTTAGATCATAATCGCTTATCGCTCTTGCTAGCTGTGCTTCATCGCCA
TGGCGGATTGCAAATGTCTGACCAAGATGTTTTTGTTAACGTTGTCGGCGGCGTAAAAGTCACGGAAACCAGTGCCGATC
TTGCTTTAATTTTGGCTCTGATATCAAGTTTTAGAAATCGTCCATTACCACAGGACTTAGTAATTTTTGGTGAAGTAGGG
CTTGCCGGCGAAATTCGTCCGGTGCCGAGTGGTCAAGAACGTATTAGCGAAGCGGCAAAACACGGTTTTAAACGTGCAAT
CGTGCCGTTTAGCAATATGCCGAAAAAACCGATAAAAGATATGGAAGTGATTGGGGTTAAAAAATTAAGTGATGCGCTAG
ATGCACTTGGTAATTTATAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (83-224)

• Subunit ChlI of Mg-chelatase (ChlI) (347-432)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-36)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.015	99.564	0.488
radA	Streptococcus mitis NCTC 12261	44.835	99.129	0.444
radA	Streptococcus pneumoniae Rx1	44.615	99.129	0.442
radA	Streptococcus pneumoniae D39	44.615	99.129	0.442
radA	Streptococcus pneumoniae R6	44.615	99.129	0.442
radA	Streptococcus pneumoniae TIGR4	44.615	99.129	0.442
radA	Streptococcus mitis SK321	44.615	99.129	0.442