Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NYR75_RS04830 Genome accession   NZ_CP103820
Coordinates   1050860..1052053 (-) Length   397 a.a.
NCBI ID   WP_279454529.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3820     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1045860..1057053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR75_RS04805 (NYR75_04810) lptE 1047652..1048146 (+) 495 WP_278225775.1 LPS assembly lipoprotein LptE -
  NYR75_RS04810 (NYR75_04815) holA 1048254..1049279 (+) 1026 WP_279454530.1 DNA polymerase III subunit delta -
  NYR75_RS04815 (NYR75_04820) yacG 1049356..1049544 (-) 189 WP_005623139.1 DNA gyrase inhibitor YacG -
  NYR75_RS04820 (NYR75_04825) coaE 1049526..1050164 (-) 639 WP_279454029.1 dephospho-CoA kinase -
  NYR75_RS04825 (NYR75_04830) - 1050186..1050860 (-) 675 WP_039197142.1 fimbrial protein -
  NYR75_RS04830 (NYR75_04835) pilC 1050860..1052053 (-) 1194 WP_279454529.1 type II secretion system F family protein Machinery gene
  NYR75_RS04835 (NYR75_04840) pilB 1052046..1053431 (-) 1386 WP_279472248.1 GspE/PulE family protein Machinery gene
  NYR75_RS04840 (NYR75_04845) pilA 1053452..1053889 (-) 438 WP_005623151.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR75_RS04845 (NYR75_04850) radA 1054069..1055448 (+) 1380 WP_014991736.1 DNA repair protein RadA Machinery gene
  NYR75_RS04850 (NYR75_04855) pepB 1055514..1056800 (+) 1287 WP_279472309.1 aminopeptidase PepB -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 44864.37 Da        Isoelectric Point: 9.6289

>NTDB_id=725513 NYR75_RS04830 WP_279454529.1 1050860..1052053(-) (pilC) [Actinobacillus equuli subsp. haemolyticus strain 3820]
MVSIFEFHWKAKNRFQQKQSGILLAQNHAEAEQKLLAKGYQDIRIQRNFAFARQPKADETTQFIAQLALLINASIPFKQA
LMMQQENCTNIKLYQWLLALNAAVTSGYSFSASLAKLGCYFSKQEIQLIRIGEQSGKLGTVLDNLAKTRSQSEKLTKKVR
KIMFYPLIVLVISCVLTLGLLVFIVPQFADLYMDKAQNLPWLTSLLFSLSAFLRQNGIFLCCSGIVAMGMLLCFAKKFGN
LTACQMRLLSYIPFFNQVIRYTRIIFFTQNLALMLSAHLHLEVALNAFLSEKMHDRLLQQQVQLTLSLLKQGYKFSEGLN
PAVFTSQVVQMIAIGEKSANLAVMCTQISDIYQLKLDYQIDLLSQLLEPILMLLMGIIIGTVLIGLYLPIFDLGVLV

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=725513 NYR75_RS04830 WP_279454529.1 1050860..1052053(-) (pilC) [Actinobacillus equuli subsp. haemolyticus strain 3820]
ATGGTTAGTATTTTTGAATTTCACTGGAAAGCGAAGAATCGGTTCCAACAAAAACAAAGCGGTATTTTATTAGCCCAAAA
TCATGCTGAGGCAGAGCAAAAGCTCTTGGCAAAAGGCTATCAAGATATTCGTATTCAACGCAATTTTGCTTTTGCTCGAC
AGCCTAAAGCAGATGAAACTACTCAATTTATTGCGCAATTAGCATTATTGATTAACGCTTCCATTCCTTTTAAACAAGCG
TTAATGATGCAGCAGGAAAATTGTACGAATATTAAATTATATCAGTGGCTACTTGCTTTGAATGCTGCTGTGACATCCGG
ATATAGTTTTTCTGCAAGTTTAGCGAAATTAGGGTGTTATTTTTCTAAGCAAGAAATCCAATTAATTCGTATTGGTGAAC
AAAGTGGTAAATTAGGTACTGTTTTGGATAATCTTGCTAAAACACGTAGCCAGTCCGAAAAATTAACGAAAAAAGTTAGA
AAAATTATGTTTTATCCGCTGATTGTGTTAGTCATTTCATGTGTATTGACTCTAGGGCTGTTAGTATTCATTGTGCCTCA
ATTTGCCGACTTATATATGGATAAAGCACAAAATTTACCATGGCTAACGTCATTATTGTTTTCTCTCTCTGCGTTTCTAC
GACAAAATGGGATATTCCTATGCTGTAGCGGTATAGTAGCGATGGGGATGTTGCTCTGTTTTGCAAAAAAATTCGGAAAT
TTGACCGCTTGTCAGATGCGTCTTTTGTCTTATATTCCCTTCTTTAATCAAGTTATTCGCTATACACGAATTATATTCTT
TACTCAGAATTTGGCGTTAATGTTAAGTGCCCATCTGCATTTAGAGGTTGCCCTAAACGCTTTTTTATCTGAGAAAATGC
ACGATCGACTTTTACAACAACAAGTACAGCTTACGTTATCTTTATTAAAACAGGGGTATAAATTTTCGGAAGGATTAAAC
CCGGCTGTATTCACTTCGCAAGTAGTACAAATGATAGCAATAGGGGAGAAAAGTGCTAATTTAGCGGTGATGTGTACGCA
GATTAGCGATATTTATCAGCTGAAATTAGATTATCAAATAGATTTGCTTTCACAATTACTTGAGCCGATTTTAATGTTAC
TTATGGGGATTATTATTGGCACGGTTTTAATTGGGCTTTATTTGCCGATTTTTGATTTAGGGGTTCTCGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-186)

Type II secretion system (T2SS), protein F (T2SSF)

(267-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

48.111

100

0.481
  pilC Haemophilus influenzae Rd KW20

38.75

100

0.39
  pilC Haemophilus influenzae 86-028NP

38.5

100

0.388