Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NYR75_RS04845 Genome accession   NZ_CP103820
Coordinates   1054069..1055448 (+) Length   459 a.a.
NCBI ID   WP_014991736.1    Uniprot ID   A0A9X4JCG7
Organism   Actinobacillus equuli subsp. haemolyticus strain 3820     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1049069..1060448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR75_RS04815 (NYR75_04820) yacG 1049356..1049544 (-) 189 WP_005623139.1 DNA gyrase inhibitor YacG -
  NYR75_RS04820 (NYR75_04825) coaE 1049526..1050164 (-) 639 WP_279454029.1 dephospho-CoA kinase -
  NYR75_RS04825 (NYR75_04830) - 1050186..1050860 (-) 675 WP_039197142.1 fimbrial protein -
  NYR75_RS04830 (NYR75_04835) pilC 1050860..1052053 (-) 1194 WP_279454529.1 type II secretion system F family protein Machinery gene
  NYR75_RS04835 (NYR75_04840) pilB 1052046..1053431 (-) 1386 WP_279472248.1 GspE/PulE family protein Machinery gene
  NYR75_RS04840 (NYR75_04845) pilA 1053452..1053889 (-) 438 WP_005623151.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR75_RS04845 (NYR75_04850) radA 1054069..1055448 (+) 1380 WP_014991736.1 DNA repair protein RadA Machinery gene
  NYR75_RS04850 (NYR75_04855) pepB 1055514..1056800 (+) 1287 WP_279472309.1 aminopeptidase PepB -
  NYR75_RS04855 (NYR75_04860) - 1056928..1057863 (+) 936 WP_279472249.1 KpsF/GutQ family sugar-phosphate isomerase -
  NYR75_RS04860 (NYR75_04865) greB 1057873..1058361 (+) 489 WP_279472250.1 transcription elongation factor GreB -
  NYR75_RS04865 (NYR75_04870) ribE 1058449..1058910 (-) 462 WP_005600491.1 6,7-dimethyl-8-ribityllumazine synthase -
  NYR75_RS04870 (NYR75_04875) - 1059021..1060226 (-) 1206 WP_279439100.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49682.38 Da        Isoelectric Point: 7.9500

>NTDB_id=725516 NYR75_RS04845 WP_014991736.1 1054069..1055448(+) (radA) [Actinobacillus equuli subsp. haemolyticus strain 3820]
MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKESSKNDRFSGYAGETSGKVQTLSEISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLSKMLPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEH
ICNIADQEKPKLMVIDSIQVMHLSDIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASL
LLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRSDELVSGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVIFGEVG
LAGEIRPVPSGQERISEAAKHGFKRAIVPFGNMPKKPIKDMEVIGVKKLSDALDALGNL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=725516 NYR75_RS04845 WP_014991736.1 1054069..1055448(+) (radA) [Actinobacillus equuli subsp. haemolyticus strain 3820]
ATGGCAAAAGCACCAAAAACGGCTTACGTATGTAATGATTGTGGCGCAGAATATTCTCGCTGGATGGGTCAATGCAAAGA
GTGCAAAGCATGGAATACGATTAGTGAAGTTCGCTTAATCTCTAGTAAAGAATCAAGCAAAAATGACCGCTTCAGTGGCT
ATGCTGGAGAGACTTCAGGCAAGGTACAAACACTTTCCGAAATCAGCTTACAAGAAGTGCCTCGTTTTAGTAGTGGGTTT
AATGAGCTTGATCGCGTACTCGGCGGTGGCGTGGTGCCCGGTTCTGCTATTCTTATCGGGGGACATCCCGGTGCGGGAAA
ATCGACACTATTACTGCAAGTGATGTGTGGTTTATCAAAAATGCTGCCAACACTCTATGTCACAGGCGAAGAATCATTAC
AACAGGTTGCAATGCGTGCTAATCGTTTAGGGCTACCAACCGATAATCTAAAAATGCTTTCGGAAACATCTGTCGAACAT
ATTTGCAATATTGCCGACCAAGAAAAACCTAAATTAATGGTAATTGACTCTATTCAAGTGATGCATTTATCCGATATTCA
ATCCTCGCCGGGTTCTGTTGCTCAAGTACGAGAATGCGCATCATTTCTTACCCGCTATGCCAAAACACGCCAAGTGGCAA
TTATTATGGTCGGTCACGTCACCAAAGACGGTACGCTTGCCGGCCCAAAAGTGTTGGAACACGCTATTGATGCCTCATTA
TTGCTAGAAGGTGAATCTGATTCACGTTTCAGAACATTACGAAGCCAAAAAAACCGATTCGGCGCGGTAAATGAACTTGG
TGTGTTTGCTATGACTGAACAAGGTTTGCGAGAAGTTAAAAATCCATCCGCTATTTTTTTAAGCCGTAGTGATGAATTGG
TTTCAGGCAGTTCTGTTATGGTTCTTTGGGAAGGGACTCGTCCGTTATTAGTTGAAATTCAAGCGCTTGTTGATCATTCA
ATGCTTGCAAATCCACGTCGTGTGGCTGTCGGTTTAGATCATAATCGCTTATCGCTCTTACTTGCTGTACTCCACCGCCA
TGGTGGGCTACAAATGTCTGACCAAGATGTTTTTGTTAACGTTGTCGGGGGCGTAAAAGTAACGGAAACCAGTGCTGATC
TCGCTTTAATTTTGGCACTGATATCAAGTTTTAGAAACCGTCCATTACCACAGGACTTAGTAATTTTTGGTGAAGTAGGG
CTTGCCGGCGAAATTCGTCCGGTGCCGAGTGGTCAAGAACGTATTAGCGAAGCGGCAAAACACGGTTTTAAACGTGCGAT
TGTACCGTTTGGTAATATGCCGAAAAAACCGATAAAAGATATGGAAGTGATTGGGGTTAAAAAATTAAGTGATGCACTAG
ATGCGCTCGGTAATTTATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

99.564

0.488
  radA Streptococcus mitis NCTC 12261

44.835

99.129

0.444
  radA Streptococcus pneumoniae Rx1

44.615

99.129

0.442
  radA Streptococcus pneumoniae D39

44.615

99.129

0.442
  radA Streptococcus pneumoniae R6

44.615

99.129

0.442
  radA Streptococcus pneumoniae TIGR4

44.615

99.129

0.442
  radA Streptococcus mitis SK321

44.615

99.129

0.442