Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NYR70_RS04705 Genome accession   NZ_CP103816
Coordinates   1065757..1066950 (-) Length   397 a.a.
NCBI ID   WP_278225778.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain 4026     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1060757..1071950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR70_RS04680 (NYR70_04680) lptE 1062549..1063043 (+) 495 WP_005597385.1 LPS assembly lipoprotein LptE -
  NYR70_RS04685 (NYR70_04685) holA 1063151..1064176 (+) 1026 WP_279477758.1 DNA polymerase III subunit delta -
  NYR70_RS04690 (NYR70_04690) yacG 1064253..1064441 (-) 189 WP_005623139.1 DNA gyrase inhibitor YacG -
  NYR70_RS04695 (NYR70_04695) coaE 1064423..1065061 (-) 639 WP_279477760.1 dephospho-CoA kinase -
  NYR70_RS04700 (NYR70_04700) - 1065083..1065757 (-) 675 WP_275216987.1 prepilin peptidase -
  NYR70_RS04705 (NYR70_04705) pilC 1065757..1066950 (-) 1194 WP_278225778.1 type II secretion system F family protein Machinery gene
  NYR70_RS04710 (NYR70_04710) pilB 1066943..1068328 (-) 1386 WP_279437884.1 GspE/PulE family protein Machinery gene
  NYR70_RS04715 (NYR70_04715) pilA 1068349..1068786 (-) 438 WP_279477765.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR70_RS04720 (NYR70_04720) radA 1068967..1070346 (+) 1380 WP_279477767.1 DNA repair protein RadA Machinery gene
  NYR70_RS04725 (NYR70_04725) pepB 1070412..1071698 (+) 1287 WP_279477878.1 aminopeptidase PepB -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 44900.48 Da        Isoelectric Point: 9.7263

>NTDB_id=725412 NYR70_RS04705 WP_278225778.1 1065757..1066950(-) (pilC) [Actinobacillus equuli subsp. equuli strain 4026]
MVSIFEFHWKAKNRFQQKQSGILLAQNHAEAEQKLLAKGYQDIRIQRNFAFARQPKADEITQFIAQLALLINASIPFKQA
LMMQQENCTNIKLYQWLLALNAAVTSGYSFSASLAKLGCYFSKQEIQLIRIGEQSGKLGTVLDNLAKTRSQSEKLTKKVR
KIMFYPLIVLVISCVLTLGLLVFIVPQFADLYLDKAQNLPWLTSLLFSLSAFLRQNGIFLCCSGIVAMGMLLCFAKKFGN
LTACQMRLLSYIPFFNQVIRYIRIIFFTQNLALMLSAHLHLEAALNAFLSEKMHDRLLQQQIRLTLSLLKQGYKFSEGLN
PTVFTSQVVQMIAIGEKSANLAVMCTQISDIYQLKLDYQIDLLSQLLEPVLMLLMGIIIGTVLIGLYLPIFDLGVLV

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=725412 NYR70_RS04705 WP_278225778.1 1065757..1066950(-) (pilC) [Actinobacillus equuli subsp. equuli strain 4026]
ATGGTTAGTATTTTTGAATTTCACTGGAAAGCGAAGAATCGGTTCCAACAAAAACAAAGCGGTATTTTATTAGCCCAAAA
TCATGCTGAGGCAGAGCAAAAGCTCTTGGCAAAAGGCTATCAAGATATTCGTATTCAACGCAATTTTGCTTTTGCTCGAC
AGCCTAAAGCAGATGAAATTACTCAATTTATTGCGCAATTAGCATTATTGATTAACGCTTCCATTCCTTTTAAACAAGCG
TTAATGATGCAGCAGGAAAATTGTACGAATATTAAATTATATCAGTGGCTACTTGCTTTGAATGCTGCTGTGACATCCGG
ATATAGTTTTTCTGCAAGTTTAGCGAAATTAGGGTGTTATTTTTCTAAGCAAGAAATCCAATTAATTCGTATTGGTGAAC
AAAGTGGTAAATTAGGTACTGTTTTGGATAATCTTGCTAAAACACGTAGCCAGTCCGAAAAATTAACGAAAAAAGTTAGA
AAAATTATGTTTTATCCGCTGATTGTGTTAGTCATTTCATGTGTATTGACTCTAGGGCTGTTAGTATTCATTGTGCCTCA
ATTTGCCGACTTATATCTGGATAAAGCACAAAATTTACCATGGCTAACGTCATTATTGTTTTCTCTCTCTGCGTTTCTAC
GACAAAATGGGATATTCCTATGCTGTAGCGGTATAGTAGCGATGGGGATGTTGCTCTGTTTTGCAAAAAAATTCGGAAAT
TTGACCGCTTGCCAGATGCGTCTTTTGTCTTATATTCCCTTCTTTAATCAAGTTATTCGCTATATACGAATTATATTCTT
TACTCAGAATTTGGCGTTAATGTTAAGTGCCCATCTGCATTTAGAGGCTGCCCTAAACGCTTTTTTATCTGAGAAAATGC
ACGATCGACTTTTACAGCAACAAATACGGCTTACATTATCTTTATTAAAACAGGGGTATAAATTTTCGGAAGGATTAAAC
CCGACTGTATTCACTTCTCAAGTAGTACAAATGATAGCAATAGGGGAGAAAAGTGCTAATTTAGCGGTGATGTGTACGCA
GATTAGTGATATTTATCAGCTGAAATTAGATTATCAAATAGATTTGCTTTCACAATTACTTGAGCCGGTTTTAATGCTAC
TTATGGGTATCATTATTGGTACGGTTTTAATTGGGCTTTATTTGCCGATTTTTGACTTAGGGGTTCTCGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-186)

Type II secretion system (T2SS), protein F (T2SSF)

(267-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

48.363

100

0.484
  pilC Haemophilus influenzae Rd KW20

39

100

0.393
  pilC Haemophilus influenzae 86-028NP

38.75

100

0.39