Detailed information NTG0725415

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: NYR70_RS04720
• Genome accession: NZ_CP103816
• Coordinates: 1068967..1070346 (+)
• Length: 459 a.a.
• NCBI ID: WP_279477767.1
• Uniprot ID: -
• Organism: Actinobacillus equuli subsp. equuli strain 4026
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1063967..1075346

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYR70_RS04690 (NYR70_04690)	yacG	1064253..1064441 (-)	189	WP_005623139.1	DNA gyrase inhibitor YacG	-
NYR70_RS04695 (NYR70_04695)	coaE	1064423..1065061 (-)	639	WP_279477760.1	dephospho-CoA kinase	-
NYR70_RS04700 (NYR70_04700)	-	1065083..1065757 (-)	675	WP_275216987.1	prepilin peptidase	-
NYR70_RS04705 (NYR70_04705)	pilC	1065757..1066950 (-)	1194	WP_278225778.1	type II secretion system F family protein	Machinery gene
NYR70_RS04710 (NYR70_04710)	pilB	1066943..1068328 (-)	1386	WP_279437884.1	GspE/PulE family protein	Machinery gene
NYR70_RS04715 (NYR70_04715)	pilA	1068349..1068786 (-)	438	WP_279477765.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
NYR70_RS04720 (NYR70_04720)	radA	1068967..1070346 (+)	1380	WP_279477767.1	DNA repair protein RadA	Machinery gene
NYR70_RS04725 (NYR70_04725)	pepB	1070412..1071698 (+)	1287	WP_279477878.1	aminopeptidase PepB	-
NYR70_RS04730 (NYR70_04730)	-	1071826..1072761 (+)	936	WP_279477769.1	KpsF/GutQ family sugar-phosphate isomerase	-
NYR70_RS04735 (NYR70_04735)	greB	1072771..1073259 (+)	489	WP_005611555.1	transcription elongation factor GreB	-
NYR70_RS04740 (NYR70_04740)	ribE	1073349..1073810 (-)	462	WP_005600491.1	6,7-dimethyl-8-ribityllumazine synthase	-
NYR70_RS04745 (NYR70_04745)	-	1073921..1075126 (-)	1206	WP_039197148.1	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	-

Sequence

Protein

• Length: 459 a.a.
• Molecular weight: 49709.40 Da
• Isoelectric Point: 7.9500

>NTDB_id=725415 NYR70_RS04720 WP_279477767.1 1068967..1070346(+) (radA) [Actinobacillus equuli subsp. equuli strain 4026]
MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKESNKNDRFSGYAGETSGKVQTLSEISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLSKMLPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEH
ICNIADQEKPKLMVIDSIQVMHLSDIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASL
LLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRSDELVSGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVIFGEVG
LAGEIRPVPSGQERISEAAKHGFKRAIVPFGNMPKKPIKDMEVIGVKKLSDALDALGNL

Nucleotide

• Length: 1380 bp

>NTDB_id=725415 NYR70_RS04720 WP_279477767.1 1068967..1070346(+) (radA) [Actinobacillus equuli subsp. equuli strain 4026]
ATGGCAAAAGCACCGAAAACGGCTTACGTATGTAATGATTGCGGCGCAGAATATTCTCGCTGGATGGGACAATGCAAAGA
GTGCAAAGCATGGAATACGATTAGTGAAGTTCGCTTAATCTCTAGTAAAGAATCAAATAAAAACGACCGCTTCAGCGGTT
ATGCCGGAGAGACATCAGGCAAGGTACAAACACTGTCCGAAATCAGCTTACAAGAAGTGCCTCGTTTTAGCAGTGGGTTT
AATGAGCTTGATCGTGTACTCGGCGGTGGCGTAGTTCCCGGTTCGGCTATTCTCATCGGGGGACATCCCGGTGCGGGAAA
ATCGACACTATTACTGCAAGTGATGTGCGGCTTATCAAAAATGCTACCGACACTCTATGTCACCGGTGAAGAATCATTAC
AACAGGTTGCAATGCGTGCTAATCGTTTAGGGCTACCAACTGATAATCTGAAAATGCTTTCGGAAACATCTGTCGAACAT
ATTTGCAATATTGCCGACCAAGAAAAACCTAAATTAATGGTAATTGACTCTATTCAAGTGATGCATTTATCCGATATTCA
ATCCTCGCCGGGTTCTGTTGCTCAAGTACGAGAATGCGCATCATTTCTTACCCGCTATGCCAAAACACGCCAAGTGGCAA
TTATTATGGTCGGTCACGTCACCAAAGACGGTACGCTTGCCGGCCCAAAAGTGTTGGAACATGCTATTGATGCCTCATTA
TTGCTAGAAGGTGAATCTGATTCACGTTTCAGAACATTACGAAGCCAAAAAAACCGATTCGGCGCGGTAAATGAACTTGG
TGTGTTTGCTATGACTGAACAAGGTTTGCGAGAAGTTAAAAATCCATCCGCTATTTTTTTAAGCCGTAGTGATGAATTGG
TTTCAGGCAGTTCTGTTATGGTTCTTTGGGAAGGGACTCGTCCGTTATTAGTTGAAATTCAAGCGCTTGTTGATCATTCA
ATGCTTGCAAATCCACGTCGTGTGGCTGTCGGTTTAGATCATAATCGCTTATCGCTCTTACTTGCTGTACTCCACCGCCA
TGGTGGGCTACAAATGTCTGACCAAGATGTTTTTGTTAACGTTGTCGGGGGCGTAAAAGTAACGGAAACCAGTGCTGATC
TCGCTTTAATTTTGGCACTGATATCAAGTTTTAGAAACCGTCCATTACCACAGGACTTAGTAATTTTTGGTGAAGTAGGG
CTTGCCGGCGAAATTCGTCCGGTGCCGAGTGGTCAAGAACGTATTAGCGAAGCGGCAAAACACGGTTTTAAACGTGCGAT
TGTACCGTTTGGTAATATGCCGAAAAAACCGATAAAAGATATGGAAGTGATTGGGGTTAAAAAATTAAGTGATGCACTAG
ATGCGCTCGGTAATTTATAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (83-224)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-36)

• Subunit ChlI of Mg-chelatase (ChlI) (347-432)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.234	99.564	0.49
radA	Streptococcus mitis NCTC 12261	44.835	99.129	0.444
radA	Streptococcus pneumoniae Rx1	44.615	99.129	0.442
radA	Streptococcus pneumoniae D39	44.615	99.129	0.442
radA	Streptococcus pneumoniae R6	44.615	99.129	0.442
radA	Streptococcus pneumoniae TIGR4	44.615	99.129	0.442
radA	Streptococcus mitis SK321	44.615	99.129	0.442