Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYR67_RS08615 Genome accession   NZ_CP103813
Coordinates   1893134..1894270 (-) Length   378 a.a.
NCBI ID   WP_279470751.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain 4130     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1888134..1899270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR67_RS08595 (NYR67_08595) secE 1888502..1888915 (-) 414 WP_279470749.1 preprotein translocase subunit SecE -
  NYR67_RS08600 (NYR67_08600) - 1889221..1889493 (+) 273 WP_039198279.1 PTS sugar transporter subunit IIB -
  NYR67_RS08605 (NYR67_08605) - 1889502..1890863 (+) 1362 WP_039198280.1 PTS ascorbate transporter subunit IIC -
  NYR67_RS08610 (NYR67_08610) - 1891083..1893089 (+) 2007 WP_279470750.1 oligopeptide transporter, OPT family -
  NYR67_RS08615 (NYR67_08615) dprA 1893134..1894270 (-) 1137 WP_279470751.1 DNA-processing protein DprA Machinery gene
  NYR67_RS08620 (NYR67_08620) def 1894455..1894967 (+) 513 WP_039195517.1 peptide deformylase -
  NYR67_RS08625 (NYR67_08625) rfaD 1895108..1896034 (+) 927 WP_115590917.1 ADP-glyceromanno-heptose 6-epimerase -
  NYR67_RS08630 (NYR67_08630) - 1896116..1896445 (-) 330 WP_039198285.1 SMR family transporter -
  NYR67_RS08635 (NYR67_08635) - 1896533..1896823 (-) 291 WP_005602339.1 YfcZ/YiiS family protein -
  NYR67_RS08640 (NYR67_08640) - 1896968..1897600 (-) 633 WP_279470752.1 tellurite resistance TerB family protein -
  NYR67_RS08645 (NYR67_08645) - 1897777..1898067 (-) 291 WP_279444228.1 putative quinol monooxygenase -
  NYR67_RS08650 (NYR67_08650) - 1898089..1898901 (-) 813 WP_039199081.1 urease accessory protein UreD -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42252.42 Da        Isoelectric Point: 5.2422

>NTDB_id=725343 NYR67_RS08615 WP_279470751.1 1893134..1894270(-) (dprA) [Actinobacillus equuli subsp. equuli strain 4130]
MSQTDLLKLLQIPQLGAQRIARLLSEVDFVQFCQYDKRQLQQIGWNEKQIQRWFNPEMRWIESALAWAEQPNQHLLTLFD
EEYPFLLRQISTAPPVLFVRGSLSSLNLPQIAIVGSRDFSAYGEYWAGYFTEQLIKHHLAVTSGLAIGIDGFCHQRAVAE
QGITIAVLGSGLDQVYPARHKKLAEQIVESGGALVSEFFPNQPPLAENFPRRNRIISGLSLGTLVVEATVNSGSLITARY
ALEQGREVFALPNSVQNPYAQGCHKLIKEGALLTETIEDILQAIQYQLPDQPRQQALFEPPQAAENSQFFARGNHLAKKL
PEMTACQQQIVEHIGLDPISIDDLAKATTLEVEMLLVELLGLELLSVIKQVSGGYVRQ

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=725343 NYR67_RS08615 WP_279470751.1 1893134..1894270(-) (dprA) [Actinobacillus equuli subsp. equuli strain 4130]
ATGTCTCAGACTGATTTACTGAAATTATTGCAGATTCCGCAACTGGGGGCGCAGCGAATAGCTCGTCTGTTATCCGAAGT
GGATTTCGTCCAATTTTGCCAATATGACAAGCGCCAATTACAACAAATTGGTTGGAACGAGAAACAGATTCAGCGCTGGT
TCAATCCGGAAATGCGTTGGATTGAGAGTGCATTGGCGTGGGCGGAGCAACCGAATCAACACTTATTGACCTTATTTGAT
GAGGAATATCCGTTTTTATTACGGCAAATTAGCACCGCACCGCCGGTATTATTTGTGCGAGGTTCGCTAAGTAGTTTGAA
CTTGCCGCAAATTGCGATTGTCGGTAGCCGAGATTTTTCCGCCTACGGAGAATACTGGGCGGGTTATTTTACCGAGCAAC
TGATTAAACATCATTTGGCGGTAACCAGCGGACTCGCGATTGGTATAGACGGCTTTTGTCATCAGCGAGCGGTAGCGGAA
CAGGGTATCACTATTGCCGTTTTGGGTAGCGGTTTAGATCAAGTCTATCCGGCAAGACACAAAAAATTGGCGGAACAAAT
TGTCGAAAGCGGCGGGGCGTTAGTGTCGGAATTTTTCCCGAATCAACCGCCGCTTGCCGAGAATTTTCCTCGTCGTAATC
GGATTATCAGCGGTTTATCGCTTGGCACATTAGTGGTTGAAGCTACGGTGAATAGTGGTTCACTGATTACCGCCCGTTAT
GCGTTGGAGCAAGGGCGAGAAGTCTTTGCACTCCCGAATTCTGTACAAAATCCGTATGCACAAGGCTGTCATAAACTGAT
CAAAGAAGGGGCGCTTTTAACTGAGACGATAGAGGATATTTTGCAAGCGATTCAATATCAACTGCCGGATCAGCCTCGGC
AACAGGCTCTGTTTGAACCGCCACAAGCGGCTGAAAACTCACAATTTTTTGCAAGGGGCAATCATCTTGCAAAAAAATTG
CCGGAAATGACCGCTTGTCAGCAACAAATTGTGGAACATATCGGTCTTGATCCGATTTCGATTGATGATTTAGCGAAAGC
GACCACATTGGAGGTGGAAATGCTATTAGTCGAGTTACTTGGTTTGGAATTATTAAGTGTGATTAAGCAGGTGAGTGGCG
GTTATGTAAGGCAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-273)

DprA winged helix domain (DprA_WH)

(319-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

75.2

99.206

0.746
  dprA Vibrio campbellii strain DS40M4

46.524

98.942

0.46
  dprA Haemophilus influenzae Rd KW20

50.291

91.005

0.458
  dprA Vibrio cholerae strain A1552

42.377

100

0.434
  dprA Legionella pneumophila strain ERS1305867

37.931

99.735

0.378
  dprA Neisseria meningitidis strain C311

38.719

94.974

0.368
  dprA Neisseria meningitidis MC58

38.719

94.974

0.368