Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NYR67_RS04635 Genome accession   NZ_CP103813
Coordinates   1054028..1054465 (-) Length   145 a.a.
NCBI ID   WP_279437885.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain 4130     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1049028..1059465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR67_RS04610 (NYR67_04610) yacG 1049929..1050117 (-) 189 WP_279471322.1 DNA gyrase inhibitor YacG -
  NYR67_RS04615 (NYR67_04615) coaE 1050099..1050737 (-) 639 WP_279471323.1 dephospho-CoA kinase -
  NYR67_RS04620 (NYR67_04620) - 1050759..1051433 (-) 675 WP_279471324.1 prepilin peptidase -
  NYR67_RS04625 (NYR67_04625) - 1051433..1052629 (-) 1197 WP_279471325.1 type II secretion system F family protein -
  NYR67_RS04630 (NYR67_04630) pilB 1052622..1054007 (-) 1386 WP_279471326.1 GspE/PulE family protein Machinery gene
  NYR67_RS04635 (NYR67_04635) pilA 1054028..1054465 (-) 438 WP_279437885.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR67_RS04640 (NYR67_04640) radA 1054646..1056025 (+) 1380 WP_014991736.1 DNA repair protein RadA Machinery gene
  NYR67_RS04645 (NYR67_04645) pepB 1056091..1057377 (+) 1287 WP_279471375.1 aminopeptidase PepB -
  NYR67_RS04650 (NYR67_04650) - 1057505..1058440 (+) 936 WP_279471327.1 KpsF/GutQ family sugar-phosphate isomerase -
  NYR67_RS04655 (NYR67_04655) greB 1058450..1058938 (+) 489 WP_005611555.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15573.90 Da        Isoelectric Point: 7.5775

>NTDB_id=725333 NYR67_RS04635 WP_279437885.1 1054028..1054465(-) (pilA) [Actinobacillus equuli subsp. equuli strain 4130]
MKFVFKPIQQAFTLIELMIVIAIIAILATVAIPSYNNYTKKAALSELLAASSAYKTDVEICIYNTGEVKNCSSGTNGIKN
GNDIKNSKYLDSISVASGVITVKGKGSVDGYSYTLTPDYSNKTLTWETACLGEDTSLFPAAFCSK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=725333 NYR67_RS04635 WP_279437885.1 1054028..1054465(-) (pilA) [Actinobacillus equuli subsp. equuli strain 4130]
ATGAAATTCGTATTCAAGCCTATACAGCAGGCATTTACCCTGATTGAATTAATGATTGTAATTGCAATCATTGCTATTTT
GGCAACGGTAGCCATTCCTTCTTATAACAATTACACCAAAAAGGCGGCATTATCCGAACTGTTAGCGGCATCTTCCGCTT
ATAAAACAGATGTGGAAATTTGTATTTATAACACGGGAGAGGTAAAAAACTGTTCTAGCGGAACGAATGGCATCAAAAAT
GGTAACGATATCAAAAACTCTAAGTATTTAGATTCTATTTCTGTAGCTTCCGGTGTAATAACGGTGAAGGGGAAAGGGAG
TGTAGATGGGTATAGCTATACGCTTACACCGGATTATTCAAATAAAACGCTAACTTGGGAGACAGCTTGTTTAGGCGAGG
ATACTAGTTTATTCCCTGCCGCGTTCTGTTCGAAATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(41-128)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Glaesserella parasuis strain SC1401

64.828

100

0.648
  pilA Haemophilus influenzae 86-028NP

56.429

96.552

0.545
  pilA Haemophilus influenzae Rd KW20

56.028

97.241

0.545
  comP Acinetobacter baylyi ADP1

40.152

91.034

0.366