Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NYR67_RS04640 Genome accession   NZ_CP103813
Coordinates   1054646..1056025 (+) Length   459 a.a.
NCBI ID   WP_014991736.1    Uniprot ID   A0A9X4JCG7
Organism   Actinobacillus equuli subsp. equuli strain 4130     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1049646..1061025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR67_RS04610 (NYR67_04610) yacG 1049929..1050117 (-) 189 WP_279471322.1 DNA gyrase inhibitor YacG -
  NYR67_RS04615 (NYR67_04615) coaE 1050099..1050737 (-) 639 WP_279471323.1 dephospho-CoA kinase -
  NYR67_RS04620 (NYR67_04620) - 1050759..1051433 (-) 675 WP_279471324.1 prepilin peptidase -
  NYR67_RS04625 (NYR67_04625) - 1051433..1052629 (-) 1197 WP_279471325.1 type II secretion system F family protein -
  NYR67_RS04630 (NYR67_04630) pilB 1052622..1054007 (-) 1386 WP_279471326.1 GspE/PulE family protein Machinery gene
  NYR67_RS04635 (NYR67_04635) pilA 1054028..1054465 (-) 438 WP_279437885.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR67_RS04640 (NYR67_04640) radA 1054646..1056025 (+) 1380 WP_014991736.1 DNA repair protein RadA Machinery gene
  NYR67_RS04645 (NYR67_04645) pepB 1056091..1057377 (+) 1287 WP_279471375.1 aminopeptidase PepB -
  NYR67_RS04650 (NYR67_04650) - 1057505..1058440 (+) 936 WP_279471327.1 KpsF/GutQ family sugar-phosphate isomerase -
  NYR67_RS04655 (NYR67_04655) greB 1058450..1058938 (+) 489 WP_005611555.1 transcription elongation factor GreB -
  NYR67_RS04660 (NYR67_04660) ribE 1059028..1059489 (-) 462 WP_005600491.1 6,7-dimethyl-8-ribityllumazine synthase -
  NYR67_RS04665 (NYR67_04665) - 1059600..1060805 (-) 1206 WP_279471328.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49682.38 Da        Isoelectric Point: 7.9500

>NTDB_id=725334 NYR67_RS04640 WP_014991736.1 1054646..1056025(+) (radA) [Actinobacillus equuli subsp. equuli strain 4130]
MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKESSKNDRFSGYAGETSGKVQTLSEISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLSKMLPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEH
ICNIADQEKPKLMVIDSIQVMHLSDIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASL
LLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRSDELVSGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVIFGEVG
LAGEIRPVPSGQERISEAAKHGFKRAIVPFGNMPKKPIKDMEVIGVKKLSDALDALGNL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=725334 NYR67_RS04640 WP_014991736.1 1054646..1056025(+) (radA) [Actinobacillus equuli subsp. equuli strain 4130]
ATGGCAAAGGCACCGAAAACGGCTTACGTATGTAATGATTGCGGCGCAGAATATTCTCGCTGGATGGGACAATGCAAAGA
GTGCAAAGCATGGAATACGATTAGTGAAGTTCGCTTAATCTCTAGTAAAGAATCAAGCAAAAATGACCGCTTCAGCGGTT
ATGCCGGAGAAACATCAGGCAAGGTACAAACACTTTCCGAAATCAGCTTACAAGAAGTGCCTCGTTTTAGTAGTGGGTTT
AATGAGCTTGATCGTGTACTCGGCGGTGGCGTGGTTCCCGGTTCTGCTATTCTCATCGGGGGACATCCTGGTGCAGGAAA
ATCGACACTATTACTGCAAGTGATGTGCGGCTTATCAAAAATGCTACCGACACTCTATGTCACCGGTGAAGAATCATTAC
AACAGGTTGCAATGCGTGCTAATCGTTTAGGGCTACCAACTGATAATCTGAAAATGCTTTCGGAAACATCTGTCGAACAT
ATTTGCAATATTGCCGACCAAGAAAAACCTAAATTAATGGTAATTGACTCTATTCAAGTGATGCATTTATCCGATATTCA
ATCCTCGCCGGGTTCTGTTGCTCAAGTACGAGAATGTGCATCATTTCTTACCCGCTATGCCAAAACACGCCAAGTGGCAA
TTATTATGGTCGGTCACGTCACCAAAGACGGTACGCTTGCCGGCCCAAAAGTGTTGGAACACGCTATTGATGCCTCATTA
TTGCTAGAAGGTGAATCTGATTCACGTTTCAGAACATTACGAAGCCAAAAAAACCGATTCGGCGCGGTAAATGAACTTGG
TGTGTTTGCTATGACTGAACAAGGTCTACGAGAAGTTAAAAATCCATCCGCTATTTTTTTAAGCCGTAGTGATGAATTGG
TTTCAGGCAGTTCTGTTATGGTTCTTTGGGAAGGGACTCGTCCGTTATTAGTTGAAATTCAAGCGCTTGTTGATCATTCA
ATGCTTGCAAATCCACGTCGTGTGGCTGTCGGTTTAGATCATAATCGCTTATCGCTCTTACTTGCTGTACTCCACCGCCA
TGGTGGGCTACAAATGTCTGACCAAGATGTTTTTGTTAACGTTGTCGGGGGCGTAAAAGTAACGGAAACCAGTGCTGATC
TCGCTTTAATTTTGGCACTGATATCAAGTTTTAGAAATCGTCCGTTGCCACAAGACTTAGTGATCTTTGGTGAAGTGGGT
CTTGCTGGTGAAATCCGTCCGGTACCGAGCGGCCAAGAGCGTATTAGCGAAGCGGCAAAACACGGTTTTAAACGTGCGAT
TGTACCGTTTGGCAATATGCCGAAAAAACCGATAAAAGATATGGAAGTGATTGGGGTTAAAAAATTAAGTGATGCGCTAG
ATGCACTTGGTAATTTATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

99.564

0.488
  radA Streptococcus mitis NCTC 12261

44.835

99.129

0.444
  radA Streptococcus pneumoniae Rx1

44.615

99.129

0.442
  radA Streptococcus pneumoniae D39

44.615

99.129

0.442
  radA Streptococcus pneumoniae R6

44.615

99.129

0.442
  radA Streptococcus pneumoniae TIGR4

44.615

99.129

0.442
  radA Streptococcus mitis SK321

44.615

99.129

0.442