Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NYR67_RS04090 Genome accession   NZ_CP103813
Coordinates   917181..917705 (+) Length   174 a.a.
NCBI ID   WP_005622535.1    Uniprot ID   A0AAX3FGS1
Organism   Actinobacillus equuli subsp. equuli strain 4130     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 912181..922705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR67_RS04085 (NYR67_04085) uvrA 914202..917030 (-) 2829 WP_279471272.1 excinuclease ABC subunit UvrA -
  NYR67_RS04090 (NYR67_04090) ssb 917181..917705 (+) 525 WP_005622535.1 single-stranded DNA-binding protein Machinery gene
  NYR67_RS04095 (NYR67_04095) - 917875..918693 (-) 819 WP_279471273.1 GIY-YIG nuclease family protein -
  NYR67_RS04100 (NYR67_04100) - 918752..918898 (+) 147 Protein_796 zinc-binding dehydrogenase -
  NYR67_RS04105 (NYR67_04105) - 919123..919317 (+) 195 WP_279471274.1 hypothetical protein -
  NYR67_RS04110 (NYR67_04110) - 919336..920172 (-) 837 WP_279471275.1 hypothetical protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19198.00 Da        Isoelectric Point: 4.9839

>NTDB_id=725331 NYR67_RS04090 WP_005622535.1 917181..917705(+) (ssb) [Actinobacillus equuli subsp. equuli strain 4130]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVAGQYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLGGRNQGGDFGGNQGGWGNSAPAPQQSYNQGNSGYGYDQTASRPAPQAAKPAQ
AEPPMDNFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=725331 NYR67_RS04090 WP_005622535.1 917181..917705(+) (ssb) [Actinobacillus equuli subsp. equuli strain 4130]
ATGGCAGGTATTAATAAAGTTATCATCGTGGGCAATTTAGGTAACGATCCTGAAATGCGCACTATGCCAAACGGCGAAGC
GGTTGCAAATATTAGCGTAGCAACCAGTGAAAGTTGGACAGATAAAAATACGGGCGAACGCCGTGAAGTAACCGAATGGC
ACCGTATCGTATTCTACCGTCGCCAAGCGGAAGTTGCCGGTCAATACTTACGTAAAGGCTCACAAGTTTATGTTGAAGGC
CGTTTAAAAACACGTAAATGGCAAGATCAAAACGGTCAAGACCGTTACACCACCGAAATCCAAGGTGACGTTTTACAAAT
GTTAGGCGGACGTAACCAAGGTGGTGATTTCGGCGGCAACCAAGGCGGTTGGGGTAATTCAGCACCAGCACCACAACAAA
GTTACAACCAAGGTAACAGCGGTTACGGTTACGATCAAACAGCAAGTCGCCCTGCTCCGCAAGCAGCGAAACCAGCTCAA
GCAGAACCACCTATGGATAACTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

76.796

100

0.799
  ssb Vibrio cholerae strain A1552

58.757

100

0.598
  ssb Neisseria meningitidis MC58

48

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.399

99.425

0.471
  ssbA Bacillus subtilis subsp. subtilis str. 168

34.872

100

0.391
  ssb Latilactobacillus sakei subsp. sakei 23K

34.615

100

0.362