Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NYR65_RS04525 Genome accession   NZ_CP103811
Coordinates   983552..984076 (+) Length   174 a.a.
NCBI ID   WP_005622535.1    Uniprot ID   A0AAX3FGS1
Organism   Actinobacillus equuli subsp. equuli strain CCUG2041     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 978552..989076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR65_RS04510 (NYR65_04510) - 979912..980196 (+) 285 WP_039197045.1 hypothetical protein -
  NYR65_RS04515 (NYR65_04515) - 980205..980498 (+) 294 WP_039197046.1 hypothetical protein -
  NYR65_RS04520 (NYR65_04520) uvrA 980573..983401 (-) 2829 WP_039197049.1 excinuclease ABC subunit UvrA -
  NYR65_RS04525 (NYR65_04525) ssb 983552..984076 (+) 525 WP_005622535.1 single-stranded DNA-binding protein Machinery gene
  NYR65_RS04530 (NYR65_04530) - 984228..984971 (-) 744 WP_279452857.1 transferrin-binding protein-like solute binding protein -
  NYR65_RS04535 (NYR65_04535) - 984968..985261 (-) 294 WP_279452858.1 hypothetical protein -
  NYR65_RS04540 (NYR65_04540) - 985673..987133 (-) 1461 WP_039197051.1 surface lipoprotein assembly modifier -
  NYR65_RS04545 (NYR65_04545) - 987302..988411 (-) 1110 WP_052190388.1 transferrin-binding protein-like solute binding protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19198.00 Da        Isoelectric Point: 4.9839

>NTDB_id=725278 NYR65_RS04525 WP_005622535.1 983552..984076(+) (ssb) [Actinobacillus equuli subsp. equuli strain CCUG2041]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVAGQYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLGGRNQGGDFGGNQGGWGNSAPAPQQSYNQGNSGYGYDQTASRPAPQAAKPAQ
AEPPMDNFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=725278 NYR65_RS04525 WP_005622535.1 983552..984076(+) (ssb) [Actinobacillus equuli subsp. equuli strain CCUG2041]
ATGGCAGGTATTAATAAAGTTATCATCGTGGGCAATTTAGGTAACGATCCTGAAATGCGCACTATGCCAAACGGCGAAGC
GGTTGCAAATATTAGCGTAGCAACCAGTGAAAGTTGGACAGATAAAAATACGGGCGAACGTCGTGAAGTAACCGAATGGC
ACCGTATCGTATTCTACCGTCGCCAAGCGGAAGTTGCCGGTCAATACTTACGTAAAGGCTCACAAGTTTATGTTGAAGGC
CGTTTAAAAACACGTAAATGGCAAGATCAAAACGGTCAAGACCGTTACACCACCGAAATCCAAGGTGACGTTTTACAAAT
GTTAGGCGGACGTAACCAAGGTGGCGATTTCGGCGGTAACCAAGGCGGTTGGGGAAATTCAGCGCCTGCACCACAACAAA
GTTACAACCAAGGTAACAGCGGTTACGGTTACGATCAAACAGCAAGTCGCCCTGCTCCGCAAGCAGCGAAACCAGCTCAA
GCAGAACCACCTATGGATAACTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

76.796

100

0.799
  ssb Vibrio cholerae strain A1552

58.757

100

0.598
  ssb Neisseria meningitidis MC58

48

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.399

99.425

0.471
  ssbA Bacillus subtilis subsp. subtilis str. 168

34.872

100

0.391
  ssb Latilactobacillus sakei subsp. sakei 23K

34.615

100

0.362