Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NYR64_RS04980 Genome accession   NZ_CP103810
Coordinates   1103644..1104081 (-) Length   145 a.a.
NCBI ID   WP_279437885.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain CCUG19799     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1098644..1109081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR64_RS04955 (NYR64_04955) yacG 1099548..1099736 (-) 189 WP_115589824.1 DNA gyrase inhibitor YacG -
  NYR64_RS04960 (NYR64_04960) coaE 1099718..1100356 (-) 639 WP_279437881.1 dephospho-CoA kinase -
  NYR64_RS04965 (NYR64_04965) - 1100378..1101052 (-) 675 WP_279437882.1 prepilin peptidase -
  NYR64_RS04970 (NYR64_04970) pilC 1101052..1102245 (-) 1194 WP_279437883.1 type II secretion system F family protein Machinery gene
  NYR64_RS04975 (NYR64_04975) pilB 1102238..1103623 (-) 1386 WP_279437884.1 GspE/PulE family protein Machinery gene
  NYR64_RS04980 (NYR64_04980) pilA 1103644..1104081 (-) 438 WP_279437885.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR64_RS04985 (NYR64_04985) radA 1104262..1105641 (+) 1380 WP_014991736.1 DNA repair protein RadA Machinery gene
  NYR64_RS04990 (NYR64_04990) pepB 1105708..1106994 (+) 1287 WP_279437961.1 aminopeptidase PepB -
  NYR64_RS04995 (NYR64_04995) - 1107122..1108057 (+) 936 WP_278225782.1 KpsF/GutQ family sugar-phosphate isomerase -
  NYR64_RS05000 (NYR64_05000) greB 1108067..1108555 (+) 489 WP_005611555.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15573.90 Da        Isoelectric Point: 7.5775

>NTDB_id=725254 NYR64_RS04980 WP_279437885.1 1103644..1104081(-) (pilA) [Actinobacillus equuli subsp. haemolyticus strain CCUG19799]
MKFVFKPIQQAFTLIELMIVIAIIAILATVAIPSYNNYTKKAALSELLAASSAYKTDVEICIYNTGEVKNCSSGTNGIKN
GNDIKNSKYLDSISVASGVITVKGKGSVDGYSYTLTPDYSNKTLTWETACLGEDTSLFPAAFCSK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=725254 NYR64_RS04980 WP_279437885.1 1103644..1104081(-) (pilA) [Actinobacillus equuli subsp. haemolyticus strain CCUG19799]
ATGAAATTCGTATTCAAGCCTATACAGCAGGCATTTACCCTGATTGAATTAATGATTGTAATTGCAATCATTGCTATTTT
GGCAACGGTAGCCATTCCTTCTTATAACAATTACACCAAAAAGGCGGCATTATCCGAACTGTTAGCGGCATCTTCCGCTT
ATAAAACAGATGTGGAAATTTGTATTTATAACACGGGAGAGGTAAAAAACTGTTCTAGCGGAACGAATGGCATCAAAAAT
GGTAACGATATCAAAAACTCTAAGTATTTAGATTCTATTTCTGTAGCTTCCGGTGTAATAACGGTGAAGGGGAAAGGGAG
TGTAGATGGGTATAGCTATACGCTTACACCGGATTATTCAAATAAAACGCTAACTTGGGAGACAGCTTGTTTAGGCGAGG
ATACTAGTTTATTCCCTGCCGCGTTCTGTTCGAAATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(41-128)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Glaesserella parasuis strain SC1401

64.828

100

0.648
  pilA Haemophilus influenzae 86-028NP

56.429

96.552

0.545
  pilA Haemophilus influenzae Rd KW20

56.028

97.241

0.545
  comP Acinetobacter baylyi ADP1

40.152

91.034

0.366