Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NYR64_RS04970 Genome accession   NZ_CP103810
Coordinates   1101052..1102245 (-) Length   397 a.a.
NCBI ID   WP_279437883.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain CCUG19799     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1096052..1107245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR64_RS04945 (NYR64_04945) lptE 1097844..1098338 (+) 495 WP_278225775.1 LPS assembly lipoprotein LptE -
  NYR64_RS04950 (NYR64_04950) holA 1098446..1099471 (+) 1026 WP_279437880.1 DNA polymerase III subunit delta -
  NYR64_RS04955 (NYR64_04955) yacG 1099548..1099736 (-) 189 WP_115589824.1 DNA gyrase inhibitor YacG -
  NYR64_RS04960 (NYR64_04960) coaE 1099718..1100356 (-) 639 WP_279437881.1 dephospho-CoA kinase -
  NYR64_RS04965 (NYR64_04965) - 1100378..1101052 (-) 675 WP_279437882.1 prepilin peptidase -
  NYR64_RS04970 (NYR64_04970) pilC 1101052..1102245 (-) 1194 WP_279437883.1 type II secretion system F family protein Machinery gene
  NYR64_RS04975 (NYR64_04975) pilB 1102238..1103623 (-) 1386 WP_279437884.1 GspE/PulE family protein Machinery gene
  NYR64_RS04980 (NYR64_04980) pilA 1103644..1104081 (-) 438 WP_279437885.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR64_RS04985 (NYR64_04985) radA 1104262..1105641 (+) 1380 WP_014991736.1 DNA repair protein RadA Machinery gene
  NYR64_RS04990 (NYR64_04990) pepB 1105708..1106994 (+) 1287 WP_279437961.1 aminopeptidase PepB -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 44936.54 Da        Isoelectric Point: 9.7263

>NTDB_id=725252 NYR64_RS04970 WP_279437883.1 1101052..1102245(-) (pilC) [Actinobacillus equuli subsp. haemolyticus strain CCUG19799]
MVSIFEFHWKAKNRFQQKQSGILLAQNHAEAEQKLLAKGYQDIRIQRNFAFARQPKADEITQFIAQLALLINASIPFKQA
LMMQQENCTNIKLYQWLLALNAAVASGYSFSASLAKLGCYFSKQEIQLIRIGEQSGKLGTVLDNLAKTRSQSEKLTKKVR
KIMFYPLIVLVISCVLTLGLLVFIVPQFADLYMDKAQNLPWLTSLLFSLSAFLRQNGIFLCCSGIVAMGMLLCFAKKFGN
LTACQMRLLSYIPFFNQVIRYTRIIFFTQNLALMLSAHLHLEVALNAFLSEKMHDRLLQQQIRLTLSLLKQGYKFSEGLN
PTVFTSQVVQMIAIGEKSANLAMMCTQISDIYQLKLDYQIDLLSQLLEPVLMLLMGIIIGTVLIGLYLPIFDLGVLV

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=725252 NYR64_RS04970 WP_279437883.1 1101052..1102245(-) (pilC) [Actinobacillus equuli subsp. haemolyticus strain CCUG19799]
ATGGTTAGTATTTTTGAATTTCACTGGAAAGCGAAGAATCGGTTCCAACAAAAACAAAGCGGTATTTTATTAGCCCAAAA
TCATGCTGAGGCAGAGCAAAAGCTCTTGGCAAAAGGCTATCAAGATATTCGTATTCAACGCAATTTTGCTTTTGCTCGAC
AGCCTAAAGCAGATGAAATTACTCAATTTATTGCGCAATTAGCATTATTGATTAACGCTTCCATTCCTTTTAAACAAGCG
TTAATGATGCAGCAGGAAAATTGTACGAATATTAAATTATATCAGTGGCTACTTGCTTTGAATGCTGCTGTGGCATCCGG
ATATAGTTTTTCTGCAAGTTTAGCGAAATTAGGGTGTTATTTTTCTAAGCAAGAAATCCAATTAATTCGTATTGGTGAAC
AAAGTGGTAAATTAGGTACTGTTTTGGATAATCTTGCTAAAACACGTAGCCAGTCCGAAAAATTAACGAAAAAAGTTAGA
AAAATTATGTTTTATCCGCTGATTGTGTTAGTCATTTCATGTGTATTGACTCTAGGGCTGTTAGTATTCATTGTGCCTCA
ATTTGCCGACTTATATATGGATAAAGCACAAAATTTACCATGGCTAACGTCATTATTGTTTTCTCTCTCTGCGTTTCTAC
GACAAAATGGGATATTCCTATGCTGTAGCGGTATAGTAGCGATGGGGATGTTGCTCTGTTTTGCAAAAAAATTCGGAAAT
TTGACCGCTTGTCAGATGCGTCTTTTGTCTTATATTCCCTTCTTTAATCAAGTTATTCGCTATACACGAATTATATTCTT
TACTCAGAATTTGGCGTTAATGTTAAGTGCCCATCTGCATTTAGAGGTTGCCCTAAACGCTTTTTTATCTGAGAAAATGC
ACGATCGACTTTTACAGCAACAAATACGGCTTACATTATCTTTATTAAAACAGGGGTATAAATTTTCGGAAGGATTAAAC
CCGACTGTATTCACTTCTCAAGTAGTACAAATGATAGCAATAGGGGAGAAAAGTGCTAATTTAGCGATGATGTGTACGCA
GATTAGTGATATTTACCAGCTGAAATTAGATTATCAAATAGATTTGCTTTCACAATTACTTGAGCCGGTTTTAATGCTAC
TTATGGGTATCATTATTGGTACGGTTTTAATTGGGCTTTATTTGCCGATTTTTGACTTAGGGGTTCTCGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(267-389)

Type II secretion system (T2SS), protein F (T2SSF)

(63-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

48.363

100

0.484
  pilC Haemophilus influenzae Rd KW20

39

100

0.393
  pilC Haemophilus influenzae 86-028NP

38.75

100

0.39