Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NYR64_RS04985 Genome accession   NZ_CP103810
Coordinates   1104262..1105641 (+) Length   459 a.a.
NCBI ID   WP_014991736.1    Uniprot ID   A0A9X4JCG7
Organism   Actinobacillus equuli subsp. haemolyticus strain CCUG19799     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1099262..1110641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR64_RS04955 (NYR64_04955) yacG 1099548..1099736 (-) 189 WP_115589824.1 DNA gyrase inhibitor YacG -
  NYR64_RS04960 (NYR64_04960) coaE 1099718..1100356 (-) 639 WP_279437881.1 dephospho-CoA kinase -
  NYR64_RS04965 (NYR64_04965) - 1100378..1101052 (-) 675 WP_279437882.1 prepilin peptidase -
  NYR64_RS04970 (NYR64_04970) pilC 1101052..1102245 (-) 1194 WP_279437883.1 type II secretion system F family protein Machinery gene
  NYR64_RS04975 (NYR64_04975) pilB 1102238..1103623 (-) 1386 WP_279437884.1 GspE/PulE family protein Machinery gene
  NYR64_RS04980 (NYR64_04980) pilA 1103644..1104081 (-) 438 WP_279437885.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR64_RS04985 (NYR64_04985) radA 1104262..1105641 (+) 1380 WP_014991736.1 DNA repair protein RadA Machinery gene
  NYR64_RS04990 (NYR64_04990) pepB 1105708..1106994 (+) 1287 WP_279437961.1 aminopeptidase PepB -
  NYR64_RS04995 (NYR64_04995) - 1107122..1108057 (+) 936 WP_278225782.1 KpsF/GutQ family sugar-phosphate isomerase -
  NYR64_RS05000 (NYR64_05000) greB 1108067..1108555 (+) 489 WP_005611555.1 transcription elongation factor GreB -
  NYR64_RS05005 (NYR64_05005) ribE 1108643..1109104 (-) 462 WP_005600491.1 6,7-dimethyl-8-ribityllumazine synthase -
  NYR64_RS05010 (NYR64_05010) - 1109215..1110420 (-) 1206 WP_279437886.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49682.38 Da        Isoelectric Point: 7.9500

>NTDB_id=725255 NYR64_RS04985 WP_014991736.1 1104262..1105641(+) (radA) [Actinobacillus equuli subsp. haemolyticus strain CCUG19799]
MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKESSKNDRFSGYAGETSGKVQTLSEISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLSKMLPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEH
ICNIADQEKPKLMVIDSIQVMHLSDIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASL
LLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRSDELVSGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVIFGEVG
LAGEIRPVPSGQERISEAAKHGFKRAIVPFGNMPKKPIKDMEVIGVKKLSDALDALGNL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=725255 NYR64_RS04985 WP_014991736.1 1104262..1105641(+) (radA) [Actinobacillus equuli subsp. haemolyticus strain CCUG19799]
ATGGCAAAGGCACCGAAAACGGCTTACGTATGTAATGATTGCGGCGCAGAATATTCTCGCTGGATGGGACAATGCAAAGA
GTGCAAAGCATGGAATACGATTAGTGAAGTTCGCTTAATCTCTAGTAAAGAATCAAGCAAAAATGACCGCTTCAGCGGTT
ATGCCGGAGAAACATCAGGCAAGGTACAAACACTTTCCGAAATCAGCTTACAAGAAGTGCCTCGTTTTAGTAGTGGGTTT
AATGAGCTTGATCGTGTACTCGGCGGTGGCGTGGTTCCCGGTTCTGCTATTCTCATCGGGGGACATCCTGGTGCAGGAAA
ATCGACACTATTACTGCAAGTGATGTGCGGCTTATCAAAAATGCTACCGACACTCTATGTCACCGGTGAAGAATCATTAC
AACAGGTTGCAATGCGTGCTAATCGTTTAGGGCTACCAACTGATAATCTGAAAATGCTTTCGGAAACATCTGTCGAACAT
ATTTGCAATATTGCCGACCAAGAAAAACCTAAATTAATGGTAATTGACTCTATTCAAGTAATGCATTTATCCGATATTCA
ATCATCGCCCGGCTCCGTTGCTCAAGTACGAGAATGTGCGTCATTTCTCACTCGCTATGCCAAAACACGCCAAGTGGCAA
TTATTATGGTCGGTCACGTTACCAAAGACGGTACGCTTGCCGGACCAAAAGTGTTGGAACACGCTATTGATGCCTCATTA
TTGCTAGAAGGTGAATCTGATTCACGTTTCAGAACATTACGAAGCCAAAAAAACCGATTTGGTGCGGTAAATGAACTTGG
CGTGTTTGCTATGACTGAACAAGGTTTGCGAGAAGTTAAAAATCCCTCTGCAATTTTTCTAAGCCGTAGTGATGAATTAG
TTTCAGGCAGTTCAGTTATGGTGCTTTGGGAAGGAACTCGCCCGTTATTAGTCGAAATTCAAGCACTCGTTGATCATTCG
ATGCTCGCAAATCCACGCCGTGTGGCGGTCGGTTTAGATCATAATCGCTTATCGCTCTTGCTAGCAGTGCTTCATCGCCA
CGGTGGATTGCAAATGTCTGACCAAGATGTTTTTGTTAACGTTGTCGGCGGCGTAAAAGTTACGGAAACCAGTGCCGATC
TCGCTTTAATTTTGGCTCTGATATCAAGTTTTAGAAATCGTCCGTTGCCACAGGACTTAGTGATCTTTGGTGAAGTAGGG
CTTGCCGGCGAAATCCGTCCGGTGCCGAGTGGTCAAGAACGTATTAGCGAAGCGGCAAAACACGGTTTTAAACGTGCGAT
CGTGCCGTTTGGCAATATGCCGAAAAAACCGATAAAAGATATGGAAGTGATTGGGGTTAAAAAATTAAGTGATGCACTGG
ATGCTCTCGGTAATTTATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

99.564

0.488
  radA Streptococcus mitis NCTC 12261

44.835

99.129

0.444
  radA Streptococcus pneumoniae Rx1

44.615

99.129

0.442
  radA Streptococcus pneumoniae D39

44.615

99.129

0.442
  radA Streptococcus pneumoniae R6

44.615

99.129

0.442
  radA Streptococcus pneumoniae TIGR4

44.615

99.129

0.442
  radA Streptococcus mitis SK321

44.615

99.129

0.442