Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   NX062_RS12340 Genome accession   NZ_CP103328
Coordinates   2308906..2309202 (-) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis strain KC14-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2303906..2314202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX062_RS12295 (NX062_12290) tasA 2304313..2305098 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  NX062_RS12300 (NX062_12295) sipW 2305162..2305734 (-) 573 WP_003230181.1 signal peptidase I SipW -
  NX062_RS12305 (NX062_12300) tapA 2305718..2306479 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  NX062_RS12310 (NX062_12305) yqzG 2306751..2307077 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  NX062_RS12315 (NX062_12310) spoIITA 2307119..2307298 (-) 180 WP_029726723.1 YqzE family protein -
  NX062_RS12320 (NX062_12315) comGG 2307370..2307744 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  NX062_RS12325 (NX062_12320) comGF 2307745..2308128 (-) 384 WP_046160582.1 ComG operon protein ComGF Machinery gene
  NX062_RS12330 (NX062_12325) comGE 2308154..2308501 (-) 348 WP_046160583.1 ComG operon protein 5 Machinery gene
  NX062_RS12335 (NX062_12330) comGD 2308485..2308916 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  NX062_RS12340 (NX062_12335) comGC 2308906..2309202 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  NX062_RS12345 (NX062_12340) comGB 2309216..2310253 (-) 1038 WP_029317912.1 comG operon protein ComGB Machinery gene
  NX062_RS12350 (NX062_12345) comGA 2310240..2311310 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  NX062_RS12355 (NX062_12350) - 2311522..2311719 (-) 198 WP_046160584.1 CBS domain-containing protein -
  NX062_RS12360 (NX062_12355) corA 2311721..2312674 (-) 954 WP_015483432.1 magnesium transporter CorA -
  NX062_RS12365 (NX062_12360) yqhB 2312817..2314145 (+) 1329 WP_046160586.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=721988 NX062_RS12340 WP_003230162.1 2308906..2309202(-) (comGC) [Bacillus subtilis strain KC14-1]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=721988 NX062_RS12340 WP_003230162.1 2308906..2309202(-) (comGC) [Bacillus subtilis strain KC14-1]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATCTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCCTACAAAACATGGTTAAGGCACAAATGACTG
CCTTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378