Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   JQN54_RS10300 Genome accession   NZ_AP024305
Coordinates   1910540..1911724 (-) Length   394 a.a.
NCBI ID   WP_203971262.1    Uniprot ID   -
Organism   Thermus thermophilus strain HB5008     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1905540..1916724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN54_RS10275 (TthHB5008_20470) fabZ 1905765..1906193 (-) 429 WP_011173839.1 3-hydroxyacyl-ACP dehydratase FabZ -
  JQN54_RS10280 (TthHB5008_20480) - 1906200..1907237 (-) 1038 WP_203971260.1 rod shape-determining protein -
  JQN54_RS10285 (TthHB5008_20490) rny 1907249..1908973 (-) 1725 WP_011228936.1 ribonuclease Y -
  JQN54_RS10290 (TthHB5008_20500) recA 1908974..1909996 (-) 1023 WP_011228937.1 recombinase RecA Machinery gene
  JQN54_RS10295 (TthHB5008_20510) thpR 1909947..1910543 (-) 597 WP_011173843.1 RNA 2',3'-cyclic phosphodiesterase -
  JQN54_RS10300 (TthHB5008_20520) cinA 1910540..1911724 (-) 1185 WP_203971262.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  JQN54_RS10305 (TthHB5008_20530) - 1911697..1912473 (-) 777 WP_041443580.1 glycine cleavage system protein T -
  JQN54_RS10310 (TthHB5008_20540) - 1912513..1913562 (+) 1050 WP_024119536.1 MFS transporter -
  JQN54_RS10315 (TthHB5008_20550) - 1913555..1914181 (+) 627 WP_011228939.1 HAD family phosphatase -
  JQN54_RS10320 (TthHB5008_20560) - 1914167..1915252 (-) 1086 WP_203971264.1 enolase C-terminal domain-like protein -
  JQN54_RS10325 (TthHB5008_20570) - 1915270..1915983 (-) 714 WP_011228941.1 hypothetical protein -
  JQN54_RS10330 (TthHB5008_20580) - 1916017..1916514 (+) 498 WP_203971266.1 bioflim formation protein -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 42987.47 Da        Isoelectric Point: 7.0543

>NTDB_id=72111 JQN54_RS10300 WP_203971262.1 1910540..1911724(-) (cinA) [Thermus thermophilus strain HB5008]
MERAEILGVGTELLYGETLDTNTAEIARSLKPYALKVERTLRVADEVAPLAREVEEAFARARLVVLSGGLGPTPDDVTRE
AVALALGEPLELDEAVLGEIEAFFRARGRAMPEANRKQAMRIPSATWLKNPRGTAPGWWVRKGGKDLVLLPGPPPEWRPM
WQEVLPRLGLPRRPYAERVLKTWGIGESEIVERLGPLFVREEEVEVGTYPKVHGVEVVVRGREDRVAELAERIKKKLLKE
VWGEGEMTLAEAVKRRMEREGATLSTMESLTGGLLGAEITRVPGASRFYLGGVVSYSVGAKARFGVPQDLLSRTVSAETA
RAMAEAARSLFGSTYALATTGVAGPDPLEGEPPGTVYVALAGPTGAEVRRYRFPGDRETVRLRSVYAALALLVT

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=72111 JQN54_RS10300 WP_203971262.1 1910540..1911724(-) (cinA) [Thermus thermophilus strain HB5008]
ATGGAGCGGGCAGAGATCCTCGGGGTAGGCACCGAGCTCCTCTACGGGGAGACCCTGGACACCAACACGGCGGAGATCGC
AAGAAGCCTCAAGCCCTACGCCCTCAAGGTGGAGAGGACCCTGAGGGTGGCGGACGAGGTGGCGCCCCTGGCCCGGGAGG
TGGAGGAGGCCTTCGCCCGGGCCAGGCTTGTGGTCCTCTCCGGCGGCCTCGGCCCCACCCCGGACGACGTGACCCGGGAG
GCGGTGGCCCTGGCCTTGGGGGAACCTTTGGAGCTGGACGAGGCCGTGCTTGGGGAGATTGAGGCCTTCTTCCGCGCCCG
GGGCCGGGCCATGCCCGAGGCCAACCGCAAGCAGGCCATGCGGATCCCCTCCGCCACCTGGCTCAAAAACCCCCGGGGCA
CCGCCCCCGGGTGGTGGGTGCGCAAAGGGGGCAAGGACCTGGTCCTCCTCCCCGGGCCCCCTCCCGAGTGGCGCCCCATG
TGGCAGGAGGTCCTGCCCCGCCTGGGCCTGCCGCGAAGGCCCTACGCCGAAAGGGTCTTGAAAACCTGGGGCATCGGGGA
GTCGGAGATCGTGGAGCGGCTTGGCCCCCTCTTCGTCCGGGAAGAGGAGGTGGAGGTGGGCACCTACCCCAAGGTCCACG
GGGTGGAGGTGGTGGTCCGGGGCCGGGAGGACCGGGTGGCGGAGCTCGCCGAGCGGATCAAGAAAAAGCTTCTTAAGGAG
GTCTGGGGCGAGGGGGAGATGACCCTCGCCGAGGCGGTGAAAAGGCGCATGGAGCGGGAGGGGGCCACCCTTTCCACCAT
GGAGAGCCTCACCGGGGGGCTTCTGGGGGCGGAGATCACCCGCGTGCCGGGGGCGAGCCGCTTCTACTTGGGGGGCGTGG
TATCCTACTCCGTAGGGGCCAAGGCCCGCTTCGGGGTGCCTCAGGACCTCCTCTCCCGGACGGTCTCCGCCGAGACCGCC
CGGGCTATGGCGGAGGCGGCGCGGTCCCTCTTCGGGTCCACCTACGCCCTGGCCACCACCGGGGTCGCGGGGCCGGACCC
CCTGGAGGGAGAGCCCCCGGGCACGGTCTACGTGGCCCTGGCGGGCCCCACGGGCGCGGAGGTGCGGCGCTACCGCTTCC
CGGGAGACCGGGAGACCGTGCGCTTAAGAAGCGTCTACGCGGCTTTGGCGCTCCTTGTGACATGA

Domains

Predicted by InterProScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(177-234)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-168)

Competence-damaged protein (CinA)

(248-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

35.351

100

0.371
  cinA Streptococcus mitis SK321

35.109

100

0.368
  cinA Streptococcus pneumoniae TIGR4

35.109

100

0.368
  cinA Streptococcus pneumoniae R36A

34.867

100

0.365
  cinA Streptococcus pneumoniae Rx1

34.867

100

0.365
  cinA Streptococcus pneumoniae R6

34.867

100

0.365
  cinA Streptococcus pneumoniae D39

34.625

100

0.363

Multiple sequence alignment