Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SHINM1_RS10535 Genome accession   NZ_AP019011
Coordinates   2100335..2101828 (-) Length   497 a.a.
NCBI ID   WP_162048785.1    Uniprot ID   A0A679I8U4
Organism   Fluviibacter phosphoraccumulans strain SHINM1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2095335..2106828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHINM1_RS10510 (SHINM1_020720) recA 2095421..2096452 (-) 1032 WP_162048788.1 recombinase RecA Machinery gene
  SHINM1_RS10515 (SHINM1_020730) - 2096595..2098631 (+) 2037 WP_242451476.1 UvrD-helicase domain-containing protein -
  SHINM1_RS10520 (SHINM1_020740) - 2098684..2099115 (-) 432 WP_162048787.1 c-type cytochrome -
  SHINM1_RS10530 (SHINM1_020750) - 2099348..2100334 (+) 987 WP_162048786.1 helix-turn-helix transcriptional regulator -
  SHINM1_RS10535 (SHINM1_020760) comM 2100335..2101828 (-) 1494 WP_162048785.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SHINM1_RS10540 (SHINM1_020770) - 2101832..2102077 (-) 246 WP_162048784.1 accessory factor UbiK family protein -
  SHINM1_RS10545 (SHINM1_020780) - 2102440..2103321 (+) 882 WP_202930730.1 TorF family putative porin -
  SHINM1_RS10550 (SHINM1_020790) glnK 2103392..2103730 (+) 339 WP_162048782.1 P-II family nitrogen regulator -
  SHINM1_RS10555 (SHINM1_020800) - 2103752..2105152 (+) 1401 WP_162048781.1 ammonium transporter -
  SHINM1_RS10560 (SHINM1_020810) - 2105253..2105693 (-) 441 WP_162048780.1 DUF2721 domain-containing protein -
  SHINM1_RS10565 (SHINM1_020820) purU 2105721..2106593 (-) 873 WP_162048779.1 formyltetrahydrofolate deformylase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52581.18 Da        Isoelectric Point: 7.6026

>NTDB_id=72086 SHINM1_RS10535 WP_162048785.1 2100335..2101828(-) (comM) [Fluviibacter phosphoraccumulans strain SHINM1]
MTLALIHTRALDGLHAPPVMVEVHVANGLPAFSLVGLADAEVREARDRVRAALLSSGFEFPARRITVNLAPADLPKDSGR
FDLPIALGLLAASGQLPALNLNDYEFAGELSLTGSLRPVRGALGLALASHQAGRTLILPEASGAEAALAEGAAVRVAHTL
REVCAHLMGEDQLPHPKKPDLSHLASYPDLSEVKGQAQARRALEIAATGGHALLMLGPPGTGKSMLATRLPGILPPLQPE
AALISAGILSLSGTFNPERFGERPFRAPHHSASPAAVIGGGSQALPGEISLATSGVLFLDELPEFDRRVLESLREPLETG
EVHIARANRRATYPAAFQLIAAMNPCPCGYQGHPTRACRCTPEQIQRYRNRLSGPLLDRIDLCIEVPALSSADLSQATPG
ESSAAVRERVAAAASIALRRQGSINARLEGKDLDTHAKPDTAGQTLLNQAVNRLGLSARAYHRLLRVARTIADLASAEHI
TAAHIGEAIQFRQLFSN

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=72086 SHINM1_RS10535 WP_162048785.1 2100335..2101828(-) (comM) [Fluviibacter phosphoraccumulans strain SHINM1]
ATGACCCTGGCGCTCATTCACACAAGAGCGCTGGATGGCCTGCACGCGCCGCCGGTCATGGTGGAAGTGCACGTGGCCAA
CGGCTTGCCGGCCTTCAGCCTGGTTGGCTTGGCCGATGCCGAGGTGCGTGAAGCGCGAGATCGCGTGCGTGCCGCCCTAT
TAAGTTCTGGCTTTGAATTTCCCGCCCGCCGCATTACCGTTAACTTGGCGCCGGCCGATCTGCCTAAAGATTCAGGGCGT
TTCGATTTACCGATTGCACTGGGCTTGCTGGCTGCGTCCGGGCAACTGCCCGCGCTGAATCTAAATGATTACGAATTTGC
TGGCGAGCTTTCGCTGACCGGTAGCCTACGCCCGGTGCGTGGTGCATTGGGCCTGGCGCTGGCCAGTCATCAGGCGGGCC
GTACGCTGATTTTGCCGGAAGCCTCCGGGGCTGAAGCGGCGTTAGCTGAAGGCGCCGCGGTCCGTGTAGCGCATACACTG
CGCGAAGTCTGTGCCCACCTGATGGGCGAAGATCAGCTGCCGCATCCGAAAAAGCCCGATCTAAGTCATTTGGCCAGCTA
TCCGGATCTCTCTGAGGTCAAAGGGCAGGCTCAGGCCCGTCGCGCCCTCGAAATTGCCGCCACTGGCGGGCACGCGCTCT
TAATGCTCGGCCCACCCGGCACCGGCAAATCCATGCTGGCCACCCGTTTGCCGGGCATCCTGCCGCCACTGCAACCGGAG
GCTGCGTTGATCTCCGCAGGGATTCTGTCGCTGTCAGGCACGTTCAACCCAGAACGCTTTGGCGAGCGACCGTTTCGCGC
ACCCCATCATAGCGCTTCGCCGGCCGCTGTGATTGGTGGTGGGAGCCAGGCCTTGCCCGGTGAGATTTCCTTAGCGACCA
GTGGCGTTCTCTTTCTGGATGAACTGCCCGAGTTTGATCGGCGTGTCCTCGAATCACTACGCGAACCCCTGGAAACCGGC
GAAGTACACATTGCCCGCGCCAACCGACGCGCCACGTATCCCGCTGCGTTTCAGTTAATCGCAGCGATGAATCCGTGCCC
GTGTGGCTATCAGGGTCACCCAACCCGTGCCTGCCGTTGTACACCTGAGCAGATTCAGCGTTATCGCAACCGTCTCTCCG
GCCCACTGCTCGACCGCATTGATCTGTGCATTGAAGTCCCCGCGTTGTCATCAGCCGATTTGTCACAAGCGACACCCGGC
GAAAGCTCGGCAGCGGTTCGTGAGCGCGTCGCCGCCGCTGCGAGTATTGCCCTCCGAAGGCAAGGGTCGATCAATGCCCG
GTTAGAAGGCAAAGATCTGGATACACACGCCAAACCGGATACCGCAGGCCAGACCCTGCTGAATCAAGCCGTGAATCGGC
TGGGCTTATCCGCCCGCGCCTATCATCGCTTACTGCGGGTGGCACGCACCATTGCCGATCTGGCAAGTGCCGAACACATT
ACGGCGGCACATATCGGCGAGGCCATTCAGTTCCGCCAGCTCTTCAGCAATTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A679I8U4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.911

100

0.519
  comM Vibrio campbellii strain DS40M4

51.308

100

0.513
  comM Glaesserella parasuis strain SC1401

50

100

0.505
  comM Haemophilus influenzae Rd KW20

49.9

100

0.503
  comM Legionella pneumophila str. Paris

49.499

100

0.497
  comM Legionella pneumophila strain ERS1305867

49.499

100

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.96

100

0.447

Multiple sequence alignment