Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JQN54_RS00925 Genome accession   NZ_AP024305
Coordinates   158111..159595 (+) Length   494 a.a.
NCBI ID   WP_011174141.1    Uniprot ID   Q72GR3
Organism   Thermus thermophilus strain HB5008     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 153111..164595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN54_RS00900 (TthHB5008_01700) - 153720..154022 (-) 303 WP_011174135.1 proton-translocating transhydrogenase family protein -
  JQN54_RS00905 (TthHB5008_01710) - 154022..155149 (-) 1128 WP_011174136.1 NAD(P) transhydrogenase subunit alpha -
  JQN54_RS00910 (TthHB5008_01720) - 155261..156157 (+) 897 WP_081641632.1 DMT family transporter -
  JQN54_RS00915 (TthHB5008_01730) - 156154..156966 (+) 813 WP_011174138.1 DMT family transporter -
  JQN54_RS00920 (TthHB5008_01740) - 156968..158098 (+) 1131 WP_024118871.1 nitrate/nitrite transporter -
  JQN54_RS00925 (TthHB5008_01750) comM 158111..159595 (+) 1485 WP_011174141.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JQN54_RS00930 (TthHB5008_01760) - 159592..161604 (-) 2013 WP_203971453.1 molybdopterin oxidoreductase family protein -
  JQN54_RS00935 (TthHB5008_01770) - 161609..163156 (-) 1548 WP_203971455.1 polyhydroxybutyrate depolymerase -
  JQN54_RS00940 (TthHB5008_01780) - 163181..163792 (+) 612 WP_203971457.1 ribonuclease HII -
  JQN54_RS00945 (TthHB5008_01790) - 163832..164311 (+) 480 WP_011227770.1 DUF4384 domain-containing protein -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 52867.22 Da        Isoelectric Point: 8.4718

>NTDB_id=72072 JQN54_RS00925 WP_011174141.1 158111..159595(+) (comM) [Thermus thermophilus strain HB5008]
MLAQVRSYALFGLDAVPVTVEVDVSPGLPSYALVGLPDKAVEESRERVRAALKNAGFPYPQARVVVNLAPAELRKEGSQF
DLPIALGLLAAQGVVPLEALSPFALAGELGLDGSLRPVPGAVNLALGALAEGKKLLLPLESAKEAALVEGVEVYGARSLQ
EAVAFLKGEEALAEARPEEAPEAVEALDLRDVKGQAKAKRALEIAAAGFHHLLMVGSPGSGKTMLARRLPFLLPPLSREE
ALEVTRIHSAAGKPVRGLVKAPPFRAPHHTVSYAGLIGGGAIPKPGEVSLAHRGVLFLDEFPEFSREALEALRQPLEDGV
VTVARARASLTFPARFLLVAAMNPCPCGWHGDPERPCTCTPAAQRRYAARISGPLLDRFDLVVEVPRLTPEELARAPEGE
GTEAVRERVLRARERMLARQGRPNGLLSGRALREHARLTPPAQALLQEAAKRMLLSARSYDRVLRVARTVADLLGEERVG
EAHVAEALAYRRAL

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=72072 JQN54_RS00925 WP_011174141.1 158111..159595(+) (comM) [Thermus thermophilus strain HB5008]
ATGCTGGCCCAGGTGCGAAGCTACGCCCTCTTCGGCCTGGACGCGGTTCCCGTCACCGTGGAGGTGGACGTTAGCCCGGG
GCTTCCCAGCTACGCCCTGGTGGGCCTGCCCGACAAGGCGGTGGAGGAAAGCCGGGAGCGCGTCCGGGCGGCCCTCAAGA
ACGCGGGCTTCCCCTACCCCCAGGCCCGGGTGGTGGTGAACCTGGCCCCGGCGGAGCTTCGGAAGGAGGGGAGCCAGTTT
GACCTTCCCATCGCCCTGGGCCTCCTCGCGGCCCAGGGGGTGGTGCCCCTCGAGGCCCTCTCCCCCTTCGCCCTCGCGGG
GGAGCTTGGCTTGGACGGGAGCCTGAGGCCCGTCCCCGGGGCGGTGAACCTGGCCCTGGGGGCCTTGGCCGAGGGGAAGA
AGCTCCTCCTGCCCCTGGAGAGCGCCAAGGAGGCGGCCTTGGTGGAGGGGGTGGAGGTCTACGGGGCGAGAAGCCTCCAG
GAAGCCGTGGCCTTCCTCAAGGGCGAGGAGGCCTTGGCCGAGGCCCGGCCCGAGGAGGCCCCGGAAGCGGTGGAGGCGCT
GGACCTCAGGGACGTCAAGGGCCAGGCCAAGGCCAAACGCGCCCTGGAGATCGCCGCCGCGGGCTTCCACCACCTCCTCA
TGGTGGGAAGCCCGGGCTCGGGGAAGACCATGCTGGCGCGGCGGCTTCCCTTCCTCCTCCCGCCCCTCTCCCGGGAGGAG
GCCTTGGAGGTGACCCGGATCCACTCCGCCGCGGGGAAGCCGGTGCGGGGGCTTGTGAAGGCCCCGCCTTTCCGCGCCCC
GCACCACACGGTGAGCTACGCTGGGCTCATCGGGGGTGGGGCCATTCCCAAGCCCGGGGAGGTCTCCTTGGCCCACCGGG
GGGTGCTCTTTCTGGACGAGTTCCCGGAGTTTTCCCGGGAGGCCCTCGAGGCCCTGCGCCAGCCCCTGGAGGACGGGGTG
GTGACCGTGGCCCGGGCCCGGGCAAGCCTCACCTTTCCCGCCCGCTTCCTCCTGGTGGCGGCCATGAACCCCTGCCCCTG
CGGCTGGCACGGGGACCCGGAAAGGCCTTGCACCTGCACCCCCGCCGCCCAGAGGCGCTACGCGGCCAGGATCTCCGGGC
CCCTCCTGGACCGGTTTGACCTGGTGGTGGAGGTGCCCCGCCTCACCCCCGAGGAGCTCGCCCGCGCCCCCGAGGGGGAG
GGCACGGAGGCGGTGCGGGAGCGGGTCCTAAGGGCCCGGGAGCGGATGCTCGCCCGCCAAGGGAGGCCCAACGGCCTCCT
CTCGGGGCGGGCCCTGAGGGAGCACGCCCGCCTCACCCCACCGGCCCAGGCCCTCCTCCAGGAGGCGGCCAAGCGGATGC
TCCTTTCGGCCCGGAGCTACGACCGCGTCCTCCGGGTGGCCCGCACCGTCGCCGACCTCCTGGGCGAGGAGAGGGTGGGG
GAGGCCCACGTGGCCGAGGCCCTGGCCTACCGCAGGGCCCTCTAG

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Subunit ChlI of Mg-chelatase (ChlI)

(20-139)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q72GR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

48.583

100

0.486
  comM Vibrio cholerae strain A1552

48.583

100

0.486
  comM Haemophilus influenzae Rd KW20

47.39

100

0.478
  comM Acinetobacter baylyi ADP1

47.862

99.393

0.476
  comM Glaesserella parasuis strain SC1401

46.23

100

0.472
  comM Vibrio campbellii strain DS40M4

46.559

100

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.04

100

0.46
  comM Legionella pneumophila str. Paris

44.689

100

0.451
  comM Legionella pneumophila strain ERS1305867

44.689

100

0.451

Multiple sequence alignment