Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   JMH49_RS09785 Genome accession   NZ_AP024270
Coordinates   1813944..1815128 (-) Length   394 a.a.
NCBI ID   WP_143591728.1    Uniprot ID   -
Organism   Thermus thermophilus strain HB5018     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1808944..1820128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMH49_RS09760 (TthHB5018_19380) fabZ 1809169..1809597 (-) 429 WP_011173839.1 3-hydroxyacyl-ACP dehydratase FabZ -
  JMH49_RS09765 (TthHB5018_19390) - 1809604..1810641 (-) 1038 WP_011173840.1 rod shape-determining protein -
  JMH49_RS09770 (TthHB5018_19400) rny 1810653..1812377 (-) 1725 WP_011228936.1 ribonuclease Y -
  JMH49_RS09775 (TthHB5018_19410) recA 1812378..1813400 (-) 1023 WP_011228937.1 recombinase RecA Machinery gene
  JMH49_RS09780 (TthHB5018_19420) thpR 1813351..1813947 (-) 597 WP_011173843.1 RNA 2',3'-cyclic phosphodiesterase -
  JMH49_RS09785 (TthHB5018_19430) cinA 1813944..1815128 (-) 1185 WP_143591728.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  JMH49_RS09790 (TthHB5018_19440) - 1815101..1815877 (-) 777 WP_041443580.1 glycine cleavage system protein T -
  JMH49_RS09795 (TthHB5018_19450) - 1815917..1816966 (+) 1050 WP_201350964.1 MFS transporter -
  JMH49_RS09800 (TthHB5018_19460) - 1816971..1817597 (+) 627 WP_024119535.1 HAD family phosphatase -
  JMH49_RS09805 (TthHB5018_19470) - 1817583..1818668 (-) 1086 WP_201350965.1 enolase C-terminal domain-like protein -
  JMH49_RS09810 (TthHB5018_19480) - 1818686..1819399 (-) 714 WP_011173850.1 hypothetical protein -
  JMH49_RS09815 (TthHB5018_19490) - 1819432..1819929 (+) 498 WP_201350966.1 bioflim formation protein -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 42887.39 Da        Isoelectric Point: 8.2345

>NTDB_id=72009 JMH49_RS09785 WP_143591728.1 1813944..1815128(-) (cinA) [Thermus thermophilus strain HB5018]
MERAEILGVGTELLYGETLDTNTAEIARSLKPYALKVERTLRVADEVAPLAREVEEAFARARLVVLSGGLGPTPDDVTRE
AVALALGEPLELDEAVLGEIEAFFRARGRAMPEANRKQAMRIPSATWLKNPRGTAPGWWVRKGGKDLVLLPGPPPEWRPM
WQEVLPRLGLPRRPYAERVLKTWGIGESEIVERLGPLFVRGEEVEVGTYPKVHGVEVVVRGREDRVAELAERIKKKLLKE
VWGEGEMTLAEAVKKRMEREGATLSTMESLTGGLLGAEITRVPGASRFYLGGVVSYSVGAKARFGVPQDLLSRTVSAETA
RAMAEAARSLFGSTYALATTGVAGPDPLEGEPPGTVYVALAGPTGAEVRRYRFPGDRETVRLRSVYAALALLVT

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=72009 JMH49_RS09785 WP_143591728.1 1813944..1815128(-) (cinA) [Thermus thermophilus strain HB5018]
ATGGAGCGGGCAGAGATCCTCGGGGTAGGCACCGAGCTCCTCTACGGGGAGACCCTGGACACCAACACGGCGGAGATCGC
AAGAAGCCTCAAGCCCTACGCCCTCAAGGTGGAGAGGACCCTGAGGGTGGCGGACGAGGTGGCGCCCCTGGCCCGGGAGG
TGGAGGAGGCCTTCGCCCGGGCCAGGCTTGTGGTCCTCTCCGGCGGCCTCGGCCCCACCCCGGACGACGTGACCCGGGAG
GCGGTGGCCCTGGCCTTGGGGGAGCCTTTGGAGCTGGACGAGGCCGTGCTTGGGGAGATTGAGGCCTTCTTCCGCGCCCG
GGGCCGGGCCATGCCCGAGGCCAACCGCAAGCAGGCCATGCGGATCCCCTCCGCCACCTGGCTCAAAAACCCCCGGGGCA
CCGCCCCCGGGTGGTGGGTGCGCAAAGGGGGCAAGGACCTGGTCCTCCTCCCCGGGCCCCCTCCCGAGTGGCGCCCCATG
TGGCAGGAGGTCCTGCCCCGCCTGGGCCTGCCGCGAAGGCCCTACGCCGAAAGGGTCTTGAAGACCTGGGGCATCGGGGA
GTCGGAGATCGTGGAGCGGCTTGGCCCCCTCTTCGTCCGGGGGGAGGAGGTGGAGGTGGGCACCTACCCCAAGGTCCACG
GGGTGGAGGTGGTGGTCCGGGGCCGGGAGGACCGGGTGGCGGAGCTCGCCGAGCGGATCAAGAAAAAGCTTCTTAAGGAG
GTCTGGGGCGAGGGGGAGATGACCCTCGCCGAGGCGGTGAAAAAGCGCATGGAGCGGGAGGGGGCCACCCTTTCCACCAT
GGAGAGCCTCACCGGGGGGCTTCTGGGGGCGGAGATCACCCGCGTGCCGGGGGCGAGCCGCTTCTATCTGGGGGGCGTGG
TATCCTACTCCGTAGGGGCCAAGGCCCGCTTCGGGGTGCCTCAGGACCTCCTCTCCCGGACGGTCTCCGCCGAGACCGCC
CGGGCTATGGCGGAGGCGGCGCGGTCCCTCTTCGGGTCCACCTACGCCCTGGCCACCACCGGGGTCGCGGGGCCGGACCC
CCTGGAGGGAGAGCCCCCGGGCACGGTCTACGTGGCCCTGGCGGGCCCCACGGGCGCGGAGGTGCGGCGCTACCGCTTCC
CGGGAGACCGGGAGACCGTGCGCCTAAGAAGCGTCTACGCGGCCTTGGCGCTCCTTGTGACATGA

Domains

Predicted by InterProScan.

Competence-damaged protein (CinA)

(248-392)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

35.351

100

0.371
  cinA Streptococcus mitis SK321

35.109

100

0.368
  cinA Streptococcus pneumoniae TIGR4

35.109

100

0.368
  cinA Streptococcus pneumoniae R36A

34.867

100

0.365
  cinA Streptococcus pneumoniae Rx1

34.867

100

0.365
  cinA Streptococcus pneumoniae R6

34.867

100

0.365
  cinA Streptococcus pneumoniae D39

34.625

100

0.363

Multiple sequence alignment