Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   EL263_RS10095 Genome accession   NZ_AP018938
Coordinates   1874059..1874472 (-) Length   137 a.a.
NCBI ID   WP_050102600.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ATCC 49619     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1869059..1879472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL263_RS10070 (SPAT_1907) - 1869754..1870578 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  EL263_RS10075 (SPAT_1908) rnpA 1870553..1870924 (-) 372 WP_000739246.1 ribonuclease P protein component -
  EL263_RS12005 - 1870941..1871072 (-) 132 WP_000768904.1 hypothetical protein -
  EL263_RS10080 (SPAT_1909) - 1871073..1872263 (-) 1191 WP_000167766.1 acetate kinase -
  EL263_RS10085 (SPAT_1910) comYH 1872314..1873267 (-) 954 WP_050308921.1 class I SAM-dependent methyltransferase Machinery gene
  EL263_RS10090 - 1873328..1873922 (-) 595 Protein_1882 class I SAM-dependent methyltransferase -
  EL263_RS10095 (SPAT_1913) comGG/cglG 1874059..1874472 (-) 414 WP_050102600.1 competence type IV pilus minor pilin ComGG Machinery gene
  EL263_RS10100 (SPAT_1914) comGF/cglF 1874450..1874911 (-) 462 WP_000250544.1 competence type IV pilus minor pilin ComGF Machinery gene
  EL263_RS10105 (SPAT_1915) comGE/cglE 1874874..1875176 (-) 303 WP_000413380.1 competence type IV pilus minor pilin ComGE Machinery gene
  EL263_RS10110 (SPAT_1916) comGD/cglD 1875139..1875543 (-) 405 WP_000588020.1 competence type IV pilus minor pilin ComGD Machinery gene
  EL263_RS10115 (SPAT_1917) comGC/cglC 1875536..1875862 (-) 327 WP_000738632.1 comG operon protein ComGC Machinery gene
  EL263_RS10120 (SPAT_1918) comGB/cglB 1875864..1876880 (-) 1017 WP_114880773.1 competence type IV pilus assembly protein ComGB Machinery gene
  EL263_RS10125 (SPAT_1919) comGA/cglA/cilD 1876828..1877769 (-) 942 WP_000249549.1 competence type IV pilus ATPase ComGA Machinery gene
  EL263_RS10130 (SPAT_1920) - 1877845..1878210 (-) 366 WP_000286415.1 DUF1033 family protein -
  EL263_RS10135 (SPAT_1921) - 1878361..1879419 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15920.34 Da        Isoelectric Point: 10.1695

>NTDB_id=71973 EL263_RS10095 WP_050102600.1 1874059..1874472(-) (comGG/cglG) [Streptococcus pneumoniae strain ATCC 49619]
MWKKKKVKAGVLLYAVTMAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQVFNLGQVSYQNKK
TSLVTTVRTDKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKVEKKKSEEKPEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=71973 EL263_RS10095 WP_050102600.1 1874059..1874472(-) (comGG/cglG) [Streptococcus pneumoniae strain ATCC 49619]
GTGTGGAAAAAGAAGAAAGTTAAGGCAGGTGTTCTCCTCTATGCAGTCACCATGGCAGCTATCTTTAGTCTTTTGTTGCA
ATTTTACTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCCATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAACAGGTCTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACAAGCTTGGTGACGACTGTTCGTACGGATAAGAGTCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGTGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTCCTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae D39

96.35

100

0.964

  comGG/cglG Streptococcus pneumoniae R6

96.35

100

0.964

  comGG/cglG Streptococcus pneumoniae TIGR4

96.35

100

0.964

  comGG/cglG Streptococcus pneumoniae Rx1

96.35

100

0.964

  comGG/cglG Streptococcus mitis SK321

86.131

100

0.861

  comGG/cglG Streptococcus mitis NCTC 12261

90.909

88.321

0.803

  comYG Streptococcus mutans UA140

40.299

97.81

0.394

  comYG Streptococcus mutans UA159

40.299

97.81

0.394


Multiple sequence alignment