Detailed information NTG0071975

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: JMH49_RS02125
• Genome accession: NZ_AP024270
• Coordinates: 392442..393416 (-)
• Length: 324 a.a.
• NCBI ID: WP_024119065.1
• Uniprot ID: -
• Organism: Thermus thermophilus strain HB5018
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 387442..398416

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JMH49_RS02105 (TthHB5018_04060)	-	387698..388126 (+)	429	WP_011227910.1	hypothetical protein	-
JMH49_RS02110 (TthHB5018_04070)	ftsH	388112..389968 (-)	1857	WP_011227911.1	ATP-dependent zinc metalloprotease FtsH	-
JMH49_RS02115 (TthHB5018_04080)	-	390041..391393 (+)	1353	WP_008631640.1	tetratricopeptide repeat protein	-
JMH49_RS02120 (TthHB5018_04090)	-	391414..392445 (-)	1032	WP_011172495.1	DUF4388 domain-containing protein	-
JMH49_RS02125 (TthHB5018_04100)	ruvB	392442..393416 (-)	975	WP_024119065.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
JMH49_RS02130 (TthHB5018_04110)	panB	393442..394227 (+)	786	WP_014630114.1	3-methyl-2-oxobutanoate hydroxymethyltransferase	-
JMH49_RS02135 (TthHB5018_04120)	-	394275..395201 (+)	927	WP_014630113.1	RluA family pseudouridine synthase	-
JMH49_RS13380	-	395303..395506 (-)	204	Protein_407	IS200/IS605 family accessory protein TnpB-related protein	-
JMH49_RS02145 (TthHB5018_04150)	-	396739..398127 (-)	1389	WP_259329994.1	IS200/IS605 family accessory protein TnpB-related protein	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 35959.72 Da
• Isoelectric Point: 6.3227

>NTDB_id=71975 JMH49_RS02125 WP_024119065.1 392442..393416(-) (ruvB) [Thermus thermophilus strain HB5018]
MDDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDL
AAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFG
IVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGL
DELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVATELAYRHLGYPPPVGP
LLEP

Nucleotide

• Length: 975 bp

>NTDB_id=71975 JMH49_RS02125 WP_024119065.1 392442..393416(-) (ruvB) [Thermus thermophilus strain HB5018]
GTGGACGACCTCGCCCTTAGGCCCAAGACCCTGGACGAGTACATCGGCCAGGAGCGCCTGAAGCAAAAGCTCCGGGTTTA
CCTCGAGGCGGCCAAGGCCCGAAAAGAGCCCTTGGAGCACCTCCTCCTCTTCGGCCCCCCGGGCCTGGGCAAGACCACCC
TGGCCCACGTCATCGCCCACGAGCTTGGGGTCAACCTCCGGGTCACCTCCGGGCCCGCCATAGAGAAGCCCGGGGACCTC
GCCGCCATCCTGGCCAACTCCCTGGAGGAAGGGGACATCCTCTTCATTGACGAGATCCACCGCCTGAGCCGCCAGGCCGA
GGAGCACCTCTACCCCGCCATGGAGGACTTCGTCATGGACATCGTCATCGGCCAAGGTCCGGCGGCGAGGACCATCCGGC
TGGAGCTTCCCCGCTTCACCCTGATCGGGGCCACCACCCGGCCCGGCCTCATCACCGCGCCCCTCTTGAGCCGCTTCGGC
ATCGTGGAGCACCTGGAGTACTACACCCCCGAGGAGCTGGCCCAAGGGGTGATGCGGGACGCCCGCCTCCTCGGGGTGAG
GATCACGGAGGAGGCCGCCCTGGAGATCGGTAGGCGGAGCCGGGGCACCATGCGCGTCGCCAAGCGCCTCTTCCGGAGGG
TGCGGGACTTCGCCCAGGTGGCGGGGGAGGAGGTCATCACCCGGGAGCGGGCCCTGGAGGCCCTTGCCGCCCTGGGCCTG
GACGAGCTGGGCTTGGAGAAGCGGGACCGGGAGATCCTGGAGGTCCTCATCCTCCGCTTCGGCGGCGGCCCCGTGGGCCT
CGCCACCCTGGCCACCGCCCTCTCCGAGGACCCGGGCACCTTGGAAGAGGTGCACGAGCCCTACCTCATCCGCCAGGGCC
TTTTGAAGCGCACTCCCCGGGGCCGGGTGGCCACGGAACTGGCCTACCGCCACCTGGGCTACCCGCCCCCGGTGGGCCCC
CTCTTGGAGCCGTGA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (168-241)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (6-165)

• RuvB C-terminal winged helix domain (WHD_RuvB) (242-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	59.105	96.605	0.571
ruvB	Streptococcus pneumoniae TIGR4	56.774	95.679	0.543
ruvB	Streptococcus pneumoniae R6	56.774	95.679	0.543
ruvB	Streptococcus pneumoniae D39	56.774	95.679	0.543
ruvB	Synechocystis sp. PCC 6803	51.258	98.148	0.503
ruvB	Helicobacter pylori 26695	50.799	96.605	0.491