Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   NWE22_RS10295 Genome accession   NZ_CP102747
Coordinates   2013195..2014376 (+) Length   393 a.a.
NCBI ID   WP_171989296.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SFJ45     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2008195..2019376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWE22_RS10265 (NWE22_10265) - 2008825..2011404 (+) 2580 WP_239604378.1 YfhO family protein -
  NWE22_RS10285 (NWE22_10285) - 2011833..2012495 (-) 663 WP_239604379.1 YoaK family protein -
  NWE22_RS10290 (NWE22_10290) rlmH 2012523..2013002 (-) 480 WP_239604380.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  NWE22_RS10295 (NWE22_10295) htrA 2013195..2014376 (+) 1182 WP_171989296.1 trypsin-like peptidase domain-containing protein Regulator
  NWE22_RS10300 (NWE22_10300) spo0J 2014439..2015197 (+) 759 WP_239604381.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 393 a.a.        Molecular weight: 41154.80 Da        Isoelectric Point: 4.2375

>NTDB_id=718724 NWE22_RS10295 WP_171989296.1 2013195..2014376(+) (htrA) [Streptococcus parasuis strain SFJ45]
MKKLLKFVILFVVGFLGGIGGYYFASSTLTQGNSTSNQANTTSVSNVQYTNDTSTTQAVEKVQDAVVSVINYQTQSSNSL
SSIFGNIESSDELAVAGEGSGVIYKKDGDTAYIVTNNHVISGAEKIDILLASGEKLSGELVGADTYSDIAVIKIAADKVT
TIAEFANSDTIKVGETAIAIGSPLGSVYANTVTQGIISSLSRTVTSQTEDGQTISTNAIQTDTAINPGNSGGPLINIQGQ
VIGINSSKITSSSVSSSGVAVEGMGFAIPSNDTVQIINQLETNGKVTRPALGVQMVNLTDLSTSQLEKAGLANTDLTSGV
LIVSTQSGLPADGKFEPYDVIIEIDGETIENKSDLQSELYKHQIGDTITVTYYRNNKKMTVDIKLTHSTDDLS

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=718724 NWE22_RS10295 WP_171989296.1 2013195..2014376(+) (htrA) [Streptococcus parasuis strain SFJ45]
ATGAAAAAATTATTGAAATTTGTTATTTTGTTTGTTGTTGGATTTTTAGGAGGAATTGGTGGGTATTACTTTGCTTCATC
AACTCTGACTCAAGGAAATTCTACTTCAAATCAAGCAAATACAACCAGTGTGAGCAATGTTCAATATACCAACGATACTT
CCACCACTCAAGCTGTGGAAAAAGTTCAAGATGCTGTTGTCTCCGTTATCAATTATCAAACTCAATCATCGAATAGCCTC
AGTTCTATTTTTGGCAACATTGAAAGTTCAGATGAGCTAGCTGTTGCTGGAGAAGGTTCAGGTGTTATTTATAAAAAAGA
TGGTGATACAGCATATATTGTTACAAACAACCACGTAATTTCAGGTGCTGAAAAAATCGATATACTTTTGGCTTCTGGAG
AAAAGCTTAGCGGAGAACTCGTAGGTGCAGATACTTATTCAGACATTGCTGTTATCAAAATTGCTGCAGATAAAGTGACC
ACTATTGCTGAATTTGCTAATTCAGACACAATTAAAGTTGGAGAAACTGCGATTGCAATTGGTAGCCCATTAGGAAGTGT
CTATGCAAATACAGTAACTCAGGGGATTATTTCTAGTCTCAGTCGTACAGTAACTTCACAAACAGAAGATGGCCAAACAA
TCTCAACAAATGCTATCCAGACTGATACAGCCATTAACCCAGGTAACTCAGGTGGACCACTTATCAATATTCAAGGACAA
GTTATCGGTATCAACTCAAGTAAAATAACCTCTAGTTCTGTCAGCAGTTCAGGAGTTGCAGTAGAAGGAATGGGCTTTGC
AATTCCCTCAAATGATACTGTACAGATAATTAATCAATTAGAAACAAATGGTAAAGTTACTCGTCCAGCTCTTGGCGTAC
AAATGGTCAATCTAACAGACCTATCTACTAGTCAATTAGAAAAAGCAGGATTAGCAAATACAGACTTAACATCTGGAGTA
CTAATTGTATCTACTCAATCAGGTTTGCCAGCTGATGGAAAATTTGAACCATATGATGTCATTATTGAAATCGATGGTGA
AACCATTGAAAATAAGAGTGATTTACAAAGTGAACTTTACAAGCATCAAATTGGCGACACCATAACTGTTACCTATTATA
GAAATAATAAGAAAATGACTGTTGACATTAAGTTGACACATTCAACGGATGATTTGTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

61.266

100

0.616

  htrA Streptococcus gordonii str. Challis substr. CH1

59.898

100

0.601

  htrA Streptococcus pneumoniae Rx1

58.418

99.746

0.583

  htrA Streptococcus pneumoniae TIGR4

58.418

99.746

0.583

  htrA Streptococcus pneumoniae D39

58.418

99.746

0.583

  htrA Streptococcus pneumoniae R6

58.418

99.746

0.583

  htrA Streptococcus mitis NCTC 12261

57.908

99.746

0.578