Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   MOP79_RS09845 Genome accession   NZ_CP102583
Coordinates   1929659..1931656 (+) Length   665 a.a.
NCBI ID   WP_029658505.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain D39Mega17545     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1924659..1936656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOP79_RS09825 - 1925027..1925860 (+) 834 WP_000806561.1 carbohydrate ABC transporter permease -
  MOP79_RS09830 - 1925867..1926034 (+) 168 WP_000692999.1 hypothetical protein -
  MOP79_RS09835 gtfA 1926218..1927660 (+) 1443 WP_001122333.1 sucrose phosphorylase -
  MOP79_RS09840 - 1927798..1928991 (+) 1194 WP_000835622.1 O-antigen ligase -
  MOP79_RS09845 amiA3 1929659..1931656 (+) 1998 WP_029658505.1 peptide ABC transporter substrate-binding protein Regulator
  MOP79_RS09850 amiC 1931723..1933219 (+) 1497 WP_000759901.1 ABC transporter permease Regulator
  MOP79_RS09855 amiD 1933219..1934145 (+) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  MOP79_RS09860 amiE 1934154..1935221 (+) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  MOP79_RS09865 amiF 1935232..1936158 (+) 927 WP_001291296.1 ATP-binding cassette domain-containing protein Regulator
  MOP79_RS09870 - 1936233..1936400 (-) 168 Protein_1960 transposase -

Sequence

Protein


Download         Length: 665 a.a.        Molecular weight: 73105.99 Da        Isoelectric Point: 4.6154

>NTDB_id=717901 MOP79_RS09845 WP_029658505.1 1929659..1931656(+) (amiA3) [Streptococcus pneumoniae strain D39Mega17545]
MNRGVENEKNRVFATAGLVLLAAGVLAACSSSKSSDSSAPKAYGYVYTADPETLDYLISSKNSTTVVTSNGIDGLFTNDN
YGNLAPAVAEDWEVSKDGLTYTYKIRKGVKWFTSDGEEYAEVTAKDFVNGLKHAADKKSEAMYLAENSVKGLADYLSGTS
TDFSTVGVKAVDDYTLQYTLNQPEPFWNSKLTYSIFWPLNEEFETSKGSDFAKPTDPTSLLYNGPFLLKGLTAKSSVEFV
KNEQYWDKENVHLDTINLAYYDGSDQESLERNFTSGAYSYARLYPTSSNYSKVAEEYKDNIYYTQSGSGIAGLGVNIDRQ
SYNYTSKTTDSEKVATKKALLNKDFRQALNFALDRSAYSAQINGKDGAALAVRNLFVKPDFVSAGEKTFGDLVAAQLPAY
GDEWKGVNLADGQDGLFNADKAKAEFAKAKKALEADGVQFPIHLDVPVDQASKNYISRIQSFKQSVETVLGVENVVVDIQ
QMTSDEFLNITYYAANASSEDWDVSGGVSWGPDYQDPSTYLDILKTTSSETTKTYLGFDNPNSPSVVQVGLKEYDKLVDE
AAKETSDLNVRYEKYAAAQAWLTDSSLFIPAMASSGAAPVLSRIVPFTGASAQTGSKGSDVYFKYLKLQDKAVTKEEYEK
AREKWLKEKAESNEKAQKELASHVK

Nucleotide


Download         Length: 1998 bp        

>NTDB_id=717901 MOP79_RS09845 WP_029658505.1 1929659..1931656(+) (amiA3) [Streptococcus pneumoniae strain D39Mega17545]
ATAAACAGAGGAGTAGAAAATGAAAAAAATCGTGTATTTGCTACAGCAGGTCTTGTTTTATTAGCAGCAGGTGTACTTGC
AGCATGCAGTTCTTCAAAATCATCTGATTCATCAGCCCCTAAAGCTTATGGCTATGTTTATACAGCAGACCCAGAAACCT
TGGACTACCTGATTTCAAGTAAAAATAGTACAACAGTAGTGACTTCAAATGGGATTGATGGTTTATTCACTAACGATAAT
TACGGTAATCTTGCTCCTGCAGTTGCAGAGGATTGGGAAGTCTCTAAGGATGGTTTGACCTACACTTATAAGATTCGTAA
AGGGGTTAAATGGTTTACCTCTGATGGAGAAGAATATGCAGAGGTGACGGCTAAAGATTTCGTGAACGGTTTAAAACACG
CAGCAGATAAAAAATCAGAAGCTATGTATTTAGCTGAAAATTCGGTTAAAGGCTTGGCAGATTATCTATCAGGAACTTCA
ACAGATTTTTCAACAGTTGGTGTCAAGGCGGTTGATGATTATACGTTACAATACACTTTGAACCAGCCTGAACCGTTCTG
GAACTCTAAGTTGACCTATTCTATTTTCTGGCCTCTGAATGAAGAATTCGAAACATCAAAAGGAAGCGATTTTGCTAAAC
CAACAGATCCGACATCCTTGCTTTATAATGGTCCATTCTTGTTGAAAGGGTTGACTGCAAAATCTTCTGTAGAGTTTGTA
AAAAATGAGCAATATTGGGATAAAGAAAATGTCCACCTAGATACTATCAATCTAGCTTACTATGATGGATCAGATCAGGA
GTCGCTAGAGCGTAACTTCACTAGTGGAGCTTATAGTTATGCCCGTCTTTACCCTACCAGCTCCAACTATTCTAAGGTTG
CAGAAGAATACAAGGACAATATCTATTACACACAATCAGGCTCTGGGATTGCTGGTCTGGGTGTGAATATTGATCGCCAA
AGTTACAACTATACTTCTAAAACTACAGATTCAGAGAAAGTAGCTACTAAGAAGGCATTGCTTAACAAAGATTTCCGTCA
AGCCTTGAATTTTGCTCTTGATCGCTCAGCTTACTCAGCTCAAATCAATGGTAAAGATGGAGCAGCTTTAGCAGTTCGTA
ATTTATTTGTAAAACCAGACTTTGTTTCAGCTGGTGAGAAGACCTTTGGTGATTTAGTCGCTGCTCAACTTCCTGCTTAT
GGTGATGAGTGGAAAGGTGTGAATTTAGCTGATGGGCAGGATGGTTTATTCAATGCTGACAAGGCCAAGGCAGAGTTTGC
GAAAGCTAAGAAAGCTTTAGAAGCAGACGGCGTTCAGTTTCCTATTCATCTGGACGTTCCAGTAGACCAAGCATCAAAAA
ACTACATATCTCGTATTCAGTCCTTTAAACAATCTGTAGAAACAGTTCTTGGTGTTGAAAATGTCGTTGTTGATATTCAA
CAAATGACAAGTGATGAATTCCTTAATATTACTTACTATGCTGCCAATGCTTCATCTGAGGATTGGGATGTATCAGGAGG
AGTTTCATGGGGGCCAGACTATCAAGACCCATCTACTTACCTGGATATTTTAAAAACAACTAGCAGTGAAACTACAAAAA
CATATTTAGGATTTGATAATCCAAATAGCCCTTCAGTAGTTCAAGTTGGTTTGAAAGAATACGATAAATTAGTTGATGAA
GCTGCCAAAGAGACAAGCGACTTGAATGTCCGTTATGAAAAATATGCAGCGGCTCAAGCATGGTTGACAGATAGTTCACT
CTTTATTCCTGCTATGGCTTCTTCTGGTGCAGCACCAGTGCTTTCACGAATTGTTCCATTTACTGGAGCTTCTGCGCAAA
CAGGCTCTAAGGGGTCAGATGTTTACTTCAAATATTTGAAATTACAAGATAAAGCGGTGACTAAGGAAGAGTATGAAAAA
GCTCGTGAAAAATGGTTGAAAGAAAAAGCTGAATCAAATGAGAAAGCTCAAAAAGAATTGGCAAGTCATGTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(84-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

66.616

99.098

0.66
  amiA3 Streptococcus thermophilus LMG 18311

66.464

99.098

0.659
  amiA Streptococcus salivarius strain HSISS4

66.565

98.947

0.659