Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   MOP79_RS09855 Genome accession   NZ_CP102583
Coordinates   1933219..1934145 (+) Length   308 a.a.
NCBI ID   WP_000103700.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain D39Mega17545     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1928219..1939145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOP79_RS09845 amiA3 1929659..1931656 (+) 1998 WP_029658505.1 peptide ABC transporter substrate-binding protein Regulator
  MOP79_RS09850 amiC 1931723..1933219 (+) 1497 WP_000759901.1 ABC transporter permease Regulator
  MOP79_RS09855 amiD 1933219..1934145 (+) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  MOP79_RS09860 amiE 1934154..1935221 (+) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  MOP79_RS09865 amiF 1935232..1936158 (+) 927 WP_001291296.1 ATP-binding cassette domain-containing protein Regulator
  MOP79_RS09870 - 1936233..1936400 (-) 168 Protein_1960 transposase -
  MOP79_RS09875 - 1936609..1936815 (-) 207 WP_014632394.1 hypothetical protein -
  MOP79_RS09880 - 1936817..1937197 (-) 381 WP_000424424.1 SP_0115 family bacteriocin-like peptide -
  MOP79_RS09885 - 1937343..1938695 (-) 1353 WP_000781030.1 HlyD family efflux transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34634.76 Da        Isoelectric Point: 9.7939

>NTDB_id=717903 MOP79_RS09855 WP_000103700.1 1933219..1934145(+) (amiD) [Streptococcus pneumoniae strain D39Mega17545]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWKSVFKQFMKKKSTVVMLGILVAIILISFIYPMFSKFDFNDVSKVNDFSVR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPPLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=717903 MOP79_RS09855 WP_000103700.1 1933219..1934145(+) (amiD) [Streptococcus pneumoniae strain D39Mega17545]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACTATTGATGCGCCAGCATA
TTCTTACTGGAAATCAGTGTTTAAACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCCATCA
TTTTGATAAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGTTCGT
TATATCAAGCCAAATGCGGAGCATTGGTTCGGTACTGACAGTAACGGTAAATCGCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCCATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGTA
TTTCAAAATCAGTTGACCGTGTCATGATGGAAGTTTACAACGTCATCTCAAACATCCCACCTCTTTTGATTGTTATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGCGTAACAACATGGATTGGTATTGCCTTCAT
GATCCGTGTGCAAATCTTGCGCTATCGTGACTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACCCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.117

100

0.831
  amiD Streptococcus thermophilus LMG 18311

81.169

100

0.812
  amiD Streptococcus thermophilus LMD-9

81.169

100

0.812