Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   MOP79_RS09850 Genome accession   NZ_CP102583
Coordinates   1931723..1933219 (+) Length   498 a.a.
NCBI ID   WP_000759901.1    Uniprot ID   P0A4M7
Organism   Streptococcus pneumoniae strain D39Mega17545     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1926723..1938219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOP79_RS09840 - 1927798..1928991 (+) 1194 WP_000835622.1 O-antigen ligase -
  MOP79_RS09845 amiA3 1929659..1931656 (+) 1998 WP_029658505.1 peptide ABC transporter substrate-binding protein Regulator
  MOP79_RS09850 amiC 1931723..1933219 (+) 1497 WP_000759901.1 ABC transporter permease Regulator
  MOP79_RS09855 amiD 1933219..1934145 (+) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  MOP79_RS09860 amiE 1934154..1935221 (+) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  MOP79_RS09865 amiF 1935232..1936158 (+) 927 WP_001291296.1 ATP-binding cassette domain-containing protein Regulator
  MOP79_RS09870 - 1936233..1936400 (-) 168 Protein_1960 transposase -
  MOP79_RS09875 - 1936609..1936815 (-) 207 WP_014632394.1 hypothetical protein -
  MOP79_RS09880 - 1936817..1937197 (-) 381 WP_000424424.1 SP_0115 family bacteriocin-like peptide -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55623.17 Da        Isoelectric Point: 9.4436

>NTDB_id=717902 MOP79_RS09850 WP_000759901.1 1931723..1933219(+) (amiC) [Streptococcus pneumoniae strain D39Mega17545]
MKKYIFMRVLRSLVSIFLVTTLTYTIIYTLVPRKLIFKQDPNYNKIATTADKRDNYENTVFERMGYIEYYDTKELQEKAS
SMDSSVTVEANATNKAIYEKYINQLGHGWTLGEFTESGQFYATREIPIFERVFHFYANLIDIDHTNKIQDPENPDLKRYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNLNLGDSYPTYANTPVLQVITQGQGQTKTAQVQFPTGKKTSSV
NIYSRTYKSPSQADSREVASYGKDDPYTATESNYQYPSMIVSSAITGLIGLVLAYALAVPLGSAMARFKNTWIDSLSTGA
LTFLLALPTIALVYIVRLIGSSIALPDSFPILGAGDWRSYVLPAVILGLLGAPGTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPAAIIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSRLLGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=717902 MOP79_RS09850 WP_000759901.1 1931723..1933219(+) (amiC) [Streptococcus pneumoniae strain D39Mega17545]
ATGAAAAAATATATTTTTATGCGTGTTTTGCGGTCATTGGTTTCGATTTTCTTAGTAACGACTTTGACCTACACGATTAT
CTATACCTTGGTTCCTCGAAAATTGATTTTCAAGCAGGATCCTAACTATAATAAAATTGCGACAACGGCTGATAAACGTG
ATAACTATGAAAATACTGTGTTTGAGCGTATGGGCTACATTGAGTATTACGATACTAAAGAGTTGCAAGAAAAGGCAAGT
AGCATGGATTCTTCTGTAACAGTAGAAGCAAATGCGACCAATAAAGCTATTTATGAAAAGTACATCAATCAATTAGGTCA
TGGTTGGACTTTGGGAGAATTTACTGAAAGTGGTCAATTCTATGCTACTCGTGAAATTCCAATTTTTGAACGTGTTTTTC
ACTTCTATGCTAACTTGATTGACATTGACCATACAAATAAAATCCAAGACCCTGAAAATCCAGACTTGAAACGCTACCTT
CGTTTTGAAAATGATCCAGCTATCGGATGGTCATTGGTCGGTTCAGGAACTAAACATAAATATCTCTTGTACTTTAACAG
TCAGTTCCCATTTGTTCATCAAAACTTTGTGAACTTGAATTTAGGTGACTCTTACCCAACCTATGCTAATACACCAGTTC
TTCAGGTTATTACTCAAGGTCAAGGACAAACCAAAACTGCCCAAGTTCAGTTCCCAACAGGTAAGAAAACGTCTTCTGTA
AATATTTACTCAAGAACCTACAAGTCACCTAGTCAGGCTGACTCTCGTGAAGTAGCTAGCTATGGGAAAGATGATCCTTA
TACAGCGACTGAAAGTAATTACCAATATCCATCTATGATTGTCAGCTCTGCTATTACTGGTTTGATTGGTTTGGTTCTTG
CCTATGCTCTTGCCGTGCCACTTGGTTCAGCCATGGCTCGTTTCAAGAACACTTGGATTGATAGCCTCTCAACAGGGGCT
TTGACCTTCTTGCTTGCTCTTCCAACGATTGCCTTGGTTTACATCGTTCGATTGATTGGATCATCTATTGCCCTTCCAGA
TTCATTCCCTATCTTGGGAGCTGGAGATTGGCGTTCTTACGTTTTACCAGCAGTCATCCTTGGTTTGTTGGGTGCTCCTG
GTACAGCCATTTGGATTCGTCGTTACATGATTGACTTGCAATCTCAAGACTTTGTTCGTTTCGCTCGTGCAAAAGGTTTG
TCTGAAAAAGAAATTTCAAACAAACACATCTTTAAAAATGCCATGGTTCCGCTGGTTTCAGGAATTCCTGCTGCCATTAT
TGGGGTTATCGGTGGTGCAACCCTTACTGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTAA
AAGCATCTAATAACTCTATGGTCGTTGGTCTTGTCTTCATCTTTACATGTATTTCTATCTTCTCACGTCTTTTGGGAGAT
ATTTGGATGACTATTATTGACCCACGTATTAAATTGACTGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A4M7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

77.309

100

0.773
  amiC Streptococcus thermophilus LMG 18311

77.108

100

0.771
  amiC Streptococcus thermophilus LMD-9

76.707

100

0.767