Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   MOP79_RS09865 Genome accession   NZ_CP102583
Coordinates   1935232..1936158 (+) Length   308 a.a.
NCBI ID   WP_001291296.1    Uniprot ID   A0A0T8U5M2
Organism   Streptococcus pneumoniae strain D39Mega17545     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1930232..1941158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOP79_RS09850 amiC 1931723..1933219 (+) 1497 WP_000759901.1 ABC transporter permease Regulator
  MOP79_RS09855 amiD 1933219..1934145 (+) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  MOP79_RS09860 amiE 1934154..1935221 (+) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  MOP79_RS09865 amiF 1935232..1936158 (+) 927 WP_001291296.1 ATP-binding cassette domain-containing protein Regulator
  MOP79_RS09870 - 1936233..1936400 (-) 168 Protein_1960 transposase -
  MOP79_RS09875 - 1936609..1936815 (-) 207 WP_014632394.1 hypothetical protein -
  MOP79_RS09880 - 1936817..1937197 (-) 381 WP_000424424.1 SP_0115 family bacteriocin-like peptide -
  MOP79_RS09885 - 1937343..1938695 (-) 1353 WP_000781030.1 HlyD family efflux transporter periplasmic adaptor subunit -
  MOP79_RS09890 - 1938692..1939159 (-) 468 WP_001096142.1 GyrI-like domain-containing protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34769.82 Da        Isoelectric Point: 6.6224

>NTDB_id=717905 MOP79_RS09865 WP_001291296.1 1935232..1936158(+) (amiF) [Streptococcus pneumoniae strain D39Mega17545]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQSIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=717905 MOP79_RS09865 WP_001291296.1 1935232..1936158(+) (amiF) [Streptococcus pneumoniae strain D39Mega17545]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTAAATGATACAAGTAATGGAGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGTTTATTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAGTATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGCGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGCTTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAGCCGAATTAGCACGTTATCAAAAAGGACTAAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T8U5M2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.574

99.026

0.847
  amiF Streptococcus thermophilus LMD-9

85.246

99.026

0.844