Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NR800_RS34390 Genome accession   NZ_CP102579
Coordinates   8605213..8606298 (+) Length   361 a.a.
NCBI ID   WP_223741236.1    Uniprot ID   -
Organism   Corallococcus interemptor strain YZPH-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8600213..8611298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NR800_RS34360 (NR800_34450) glmS 8600472..8602307 (+) 1836 WP_223741242.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  NR800_RS34365 (NR800_34455) - 8602394..8602669 (-) 276 WP_223741241.1 hypothetical protein -
  NR800_RS34370 (NR800_34460) - 8602666..8603160 (-) 495 WP_375743335.1 DUF3106 domain-containing protein -
  NR800_RS34375 (NR800_34465) - 8603160..8603639 (-) 480 WP_223741239.1 anti-sigma factor -
  NR800_RS34380 (NR800_34470) - 8603636..8604238 (-) 603 WP_223741238.1 RNA polymerase sigma factor -
  NR800_RS34385 (NR800_34475) - 8604330..8605100 (+) 771 WP_375743336.1 hypothetical protein -
  NR800_RS34390 (NR800_34480) recA 8605213..8606298 (+) 1086 WP_223741236.1 recombinase RecA Machinery gene
  NR800_RS34395 (NR800_34485) - 8606552..8608690 (+) 2139 WP_375743337.1 alkaline phosphatase D family protein -
  NR800_RS34400 (NR800_34490) - 8608818..8611100 (+) 2283 WP_375743338.1 Tex family protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38793.58 Da        Isoelectric Point: 6.8716

>NTDB_id=717780 NR800_RS34390 WP_223741236.1 8605213..8606298(+) (recA) [Corallococcus interemptor strain YZPH-2]
MAVNQEKEKAIELALAAVERQFGKGSIMRLGNDEPMMKDVQAISTGSTSLDIALGVGGVPRGRIIEIFGPESSGKTTLCL
HIVAEAQKKGGVCGYIDAEHAMDVGYARKLGVRTDDLLLSQPDTGEQGLEIAEMLVRSGAIDVLVVDSVAALVPKAELEG
EMGDAHMGVQARLMSQALRKLTGTISKSQTCVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRMDIRRVGAIKNGENV
VGSRTRVKVVKNKVAPPFKEVEFDIMYGAGISKEGDLIDLASNENIIEKSGSWFSFKGERIGQGRENAKEYLREHPETYK
EIEGLVLEKYGIGKAAGAAAPAAEASEPAEGEKRPRVKAVK

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=717780 NR800_RS34390 WP_223741236.1 8605213..8606298(+) (recA) [Corallococcus interemptor strain YZPH-2]
ATGGCCGTGAATCAGGAGAAGGAAAAGGCGATCGAGCTGGCGCTGGCGGCGGTGGAGCGTCAGTTCGGCAAGGGTTCCAT
CATGCGGCTCGGCAACGACGAGCCCATGATGAAGGACGTCCAGGCCATTTCGACGGGGTCCACTTCGCTCGACATCGCCC
TGGGCGTGGGCGGTGTCCCGCGCGGGCGCATCATCGAAATCTTCGGGCCGGAGTCCTCCGGCAAGACGACGCTGTGTCTC
CACATCGTCGCGGAGGCGCAGAAGAAGGGCGGCGTGTGCGGCTACATCGACGCGGAGCACGCGATGGACGTGGGCTACGC
GCGCAAGCTGGGCGTGCGCACCGACGACCTGCTCCTGTCCCAGCCGGACACCGGTGAGCAGGGCCTCGAAATCGCGGAGA
TGCTCGTGCGCTCCGGCGCCATCGACGTGCTGGTGGTGGACTCGGTGGCCGCGCTCGTGCCGAAGGCGGAACTGGAAGGC
GAGATGGGCGACGCGCACATGGGCGTGCAGGCCCGCCTCATGAGCCAGGCGCTGCGCAAGCTCACGGGCACCATCTCCAA
GAGCCAGACGTGCGTCATCTTCATCAACCAGATCCGCATGAAGATTGGCGTGATGTTCGGCAACCCGGAGACGACCACGG
GCGGCAACGCGCTGAAGTTCTACGCGTCGCAGCGCATGGACATCCGCCGCGTGGGCGCCATCAAGAACGGCGAGAACGTG
GTGGGCAGCCGCACCCGCGTGAAGGTCGTGAAGAACAAGGTGGCGCCGCCGTTCAAGGAAGTCGAATTCGACATCATGTA
CGGCGCGGGCATCTCGAAGGAGGGCGACCTCATCGACCTGGCCTCCAACGAGAACATCATCGAGAAGAGCGGGAGCTGGT
TCTCCTTCAAGGGAGAGCGCATCGGCCAGGGCCGGGAGAACGCGAAGGAGTACCTGCGCGAGCACCCGGAGACCTACAAG
GAGATCGAGGGCCTGGTGCTGGAGAAGTACGGCATCGGCAAGGCGGCCGGTGCGGCGGCCCCCGCGGCGGAAGCAAGCGA
GCCGGCGGAGGGCGAGAAGCGCCCGCGCGTGAAGGCCGTGAAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

67.273

91.413

0.615
  recA Latilactobacillus sakei subsp. sakei 23K

63.422

93.906

0.596
  recA Pseudomonas stutzeri DSM 10701

62.573

94.737

0.593
  recA Vibrio cholerae strain A1552

66.044

88.92

0.587
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.044

88.92

0.587
  recA Neisseria gonorrhoeae MS11

65.732

88.92

0.584
  recA Neisseria gonorrhoeae strain FA1090

65.732

88.92

0.584
  recA Neisseria gonorrhoeae MS11

65.732

88.92

0.584
  recA Acinetobacter baylyi ADP1

61.159

95.568

0.584
  recA Glaesserella parasuis strain SC1401

64.89

88.366

0.573
  recA Streptococcus pneumoniae Rx1

62.236

91.69

0.571
  recA Streptococcus pneumoniae TIGR4

62.236

91.69

0.571
  recA Streptococcus pneumoniae R6

62.236

91.69

0.571
  recA Streptococcus pneumoniae D39

62.236

91.69

0.571
  recA Helicobacter pylori strain NCTC11637

62.048

91.967

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.934

91.69

0.568
  recA Acinetobacter baumannii D1279779

63.863

88.92

0.568
  recA Helicobacter pylori 26695

61.446

91.967

0.565
  recA Bacillus subtilis subsp. subtilis str. 168

62.08

90.582

0.562
  recA Streptococcus pyogenes NZ131

57.88

96.676

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.346

89.751

0.56
  recA Streptococcus mitis NCTC 12261

61.027

91.69

0.56
  recA Streptococcus mitis SK321

61.027

91.69

0.56
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.241

91.967

0.554
  recA Lactococcus lactis subsp. cremoris KW2

58.308

91.69

0.535
  recA Streptococcus mutans UA159

58.006

91.69

0.532