Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NR800_RS33755 Genome accession   NZ_CP102579
Coordinates   8453479..8454840 (-) Length   453 a.a.
NCBI ID   WP_223740559.1    Uniprot ID   -
Organism   Corallococcus interemptor strain YZPH-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8448479..8459840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NR800_RS33735 (NR800_33825) - 8448620..8449198 (+) 579 WP_223740563.1 NUDIX hydrolase -
  NR800_RS33740 (NR800_33830) - 8449205..8450686 (-) 1482 WP_375743295.1 ATP-binding protein -
  NR800_RS33745 (NR800_33835) - 8450953..8452671 (+) 1719 WP_375743296.1 hypothetical protein -
  NR800_RS33750 (NR800_33840) - 8452816..8453466 (+) 651 WP_375743297.1 hypothetical protein -
  NR800_RS33755 (NR800_33845) radA 8453479..8454840 (-) 1362 WP_223740559.1 DNA repair protein RadA Machinery gene
  NR800_RS33760 (NR800_33850) - 8455026..8455295 (+) 270 WP_120597359.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  NR800_RS33765 (NR800_33855) bioB 8455487..8456512 (+) 1026 WP_223740558.1 biotin synthase BioB -
  NR800_RS33770 (NR800_33860) bioF 8456509..8457690 (+) 1182 WP_223763807.1 8-amino-7-oxononanoate synthase -
  NR800_RS33775 (NR800_33865) bioD 8457680..8458375 (+) 696 WP_375743298.1 dethiobiotin synthase -
  NR800_RS33780 (NR800_33870) - 8458491..8458769 (+) 279 WP_223740555.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48013.24 Da        Isoelectric Point: 7.3489

>NTDB_id=717779 NR800_RS33755 WP_223740559.1 8453479..8454840(-) (radA) [Corallococcus interemptor strain YZPH-2]
MAKAKTHYTCQACGYQTAKWLGKCPDCGAWSSLLEETEAKVDDKRPAWGASGGSSRPVKLQDVTAETEVRRRTGITEFDR
VLGGGVVGGSLVLLGGDPGIGKSTLLLAALDKLSRHGPVLYVSGEESLRQTKMRAERLRVEGDAIHLFAETDADRVLQAA
EALKPQALVVDSIQTMYLPELGNAPGSITQVREVAGRLMAFAKRSGVPTFLVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRLLRAHKNRFGSTNEIGVFEMKGAGLVEVADPSALFLSERPQGKSGSVVTSTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDGNRVALLAAVLEKKEEIPLVGCDLFVNVAGGMQLSEPACDLAVCAALVSSLQNRPLDAKTLVLGEVGLAGEV
RAVGQVEPRLAEAAKMGFQRVVLPAGSARRVEATKLQVVGVETLSEALAAMFD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=717779 NR800_RS33755 WP_223740559.1 8453479..8454840(-) (radA) [Corallococcus interemptor strain YZPH-2]
ATGGCGAAGGCGAAGACGCACTACACCTGTCAGGCCTGCGGCTACCAGACGGCGAAGTGGCTCGGGAAGTGTCCGGACTG
CGGGGCCTGGAGCTCGCTCCTGGAGGAGACCGAAGCGAAGGTGGACGACAAGCGCCCGGCGTGGGGCGCGTCCGGGGGCT
CCTCCCGGCCGGTGAAGCTGCAGGACGTGACGGCGGAGACGGAGGTGCGCCGCCGCACGGGCATCACGGAGTTCGACCGC
GTGCTGGGCGGCGGCGTGGTGGGCGGCTCGCTGGTGCTGCTCGGCGGTGACCCGGGCATCGGCAAGTCCACGCTGCTGCT
GGCGGCGCTGGACAAGCTGTCGCGGCACGGGCCGGTGCTCTACGTGTCGGGTGAAGAGAGCCTGCGGCAGACGAAGATGC
GCGCGGAGCGCCTGCGGGTGGAGGGGGACGCCATCCACCTGTTCGCGGAGACGGACGCGGACCGGGTGCTCCAGGCGGCG
GAGGCGCTCAAGCCGCAGGCGCTGGTGGTGGACTCCATCCAGACCATGTACCTGCCGGAGCTGGGCAACGCGCCGGGCAG
CATCACCCAGGTGCGCGAGGTGGCGGGCCGGCTGATGGCGTTCGCCAAGCGCAGCGGGGTGCCCACGTTCCTGGTGGGGC
ACGTGACGAAGGAGGGCTCCATCGCGGGTCCCCGGGTGCTGGAGCACATGGTGGACACGGTCCTCTACTTCGAGGGCGAG
CGCGGCCACCCGTTCCGCCTGCTGCGCGCGCACAAGAACCGCTTCGGCAGCACCAACGAGATTGGCGTCTTCGAGATGAA
GGGCGCGGGGCTGGTGGAGGTGGCGGACCCGTCCGCGCTGTTCCTCTCCGAGCGCCCGCAGGGCAAGTCCGGCAGCGTGG
TGACGAGCACGCTCAACGGCACCCGTCCGCTGCTGGTGGAGGTGCAGGCGCTGGTGGCGCCCACGGGCTACGGCACGGCG
AGGCGCACGGCGATTGGCGTGGACGGCAACCGCGTGGCGCTGCTGGCGGCGGTGCTGGAGAAGAAGGAGGAGATCCCGCT
GGTGGGCTGCGACCTGTTCGTCAACGTGGCGGGCGGCATGCAGTTGAGCGAACCGGCGTGCGACCTGGCGGTGTGCGCGG
CGCTGGTGAGCAGCCTGCAGAACCGGCCGTTGGACGCGAAGACGCTGGTGCTGGGAGAGGTGGGGCTCGCGGGCGAGGTG
CGCGCGGTGGGCCAGGTGGAGCCGAGGCTCGCGGAGGCCGCGAAGATGGGCTTCCAGCGGGTGGTGCTGCCCGCGGGCAG
CGCGCGGCGCGTGGAGGCGACGAAGCTCCAGGTGGTGGGCGTGGAGACCCTGAGCGAGGCGCTGGCCGCGATGTTCGACT
GA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(351-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)

AAA domain (AAA_25)

(57-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.434

99.779

0.523
  radA Streptococcus mitis NCTC 12261

52.097

100

0.521
  radA Streptococcus pneumoniae Rx1

52.097

100

0.521
  radA Streptococcus pneumoniae D39

52.097

100

0.521
  radA Streptococcus pneumoniae R6

52.097

100

0.521
  radA Streptococcus pneumoniae TIGR4

52.097

100

0.521
  radA Streptococcus mitis SK321

51.876

100

0.519