Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NQE15_RS23115 Genome accession   NZ_CP102486
Coordinates   4638166..4638453 (-) Length   95 a.a.
NCBI ID   WP_265945180.1    Uniprot ID   -
Organism   Dechloromonas sp. A34     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4633166..4643453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQE15_RS23080 - 4633272..4633958 (-) 687 WP_265945168.1 DUF4197 domain-containing protein -
  NQE15_RS23085 - 4633984..4634673 (-) 690 Protein_4537 ATPase, T2SS/T4P/T4SS family -
  NQE15_RS23090 pilT 4634706..4635749 (-) 1044 WP_265945170.1 type IV pilus twitching motility protein PilT Machinery gene
  NQE15_RS23095 - 4635806..4636495 (+) 690 WP_265945172.1 YggS family pyridoxal phosphate-dependent enzyme -
  NQE15_RS23100 proC 4636492..4637304 (+) 813 WP_265945174.1 pyrroline-5-carboxylate reductase -
  NQE15_RS23105 - 4637307..4637840 (+) 534 WP_265945176.1 YggT family protein -
  NQE15_RS23110 - 4637837..4638133 (+) 297 WP_265945178.1 DUF167 domain-containing protein -
  NQE15_RS23115 comE 4638166..4638453 (-) 288 WP_265945180.1 ComEA family DNA-binding protein Machinery gene
  NQE15_RS23120 - 4638559..4639503 (-) 945 WP_323054922.1 dihydroorotase -
  NQE15_RS23975 - 4639568..4639804 (-) 237 WP_323054923.1 hypothetical protein -
  NQE15_RS23125 - 4639806..4640765 (-) 960 WP_265945181.1 aspartate carbamoyltransferase catalytic subunit -
  NQE15_RS23130 pyrR 4640758..4641267 (-) 510 WP_265945183.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  NQE15_RS23135 ruvX 4641239..4641685 (-) 447 WP_265945185.1 Holliday junction resolvase RuvX -
  NQE15_RS23140 - 4641678..4642238 (-) 561 WP_265945187.1 YqgE/AlgH family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9936.65 Da        Isoelectric Point: 10.5367

>NTDB_id=717261 NQE15_RS23115 WP_265945180.1 4638166..4638453(-) (comE) [Dechloromonas sp. A34]
MKRILIAIMLCLASISLAFAAVNINTASVDELDAVKGIGPSKAKAIVDYRSKNGQFKSVDDLKGVKGFGEKSVARLRGEL
TVGDSASPAVKSAKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=717261 NQE15_RS23115 WP_265945180.1 4638166..4638453(-) (comE) [Dechloromonas sp. A34]
ATGAAACGTATCCTGATCGCGATCATGCTGTGCCTGGCCAGCATCAGCCTGGCGTTCGCCGCAGTCAATATCAACACCGC
CAGCGTCGATGAACTCGATGCCGTCAAGGGCATCGGCCCGAGCAAAGCCAAGGCCATCGTCGATTACCGCAGCAAGAACG
GGCAATTCAAGTCGGTGGACGACCTCAAGGGGGTCAAGGGTTTTGGCGAGAAAAGCGTCGCCCGGCTGCGCGGCGAACTG
ACGGTCGGCGATTCGGCAAGCCCAGCGGTCAAGTCGGCGAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

49

100

0.516
  comE Neisseria gonorrhoeae MS11

49

100

0.516
  comE Neisseria gonorrhoeae MS11

49

100

0.516
  comE Neisseria gonorrhoeae MS11

49

100

0.516
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

46.341

86.316

0.4
  comEA Vibrio parahaemolyticus RIMD 2210633

42.529

91.579

0.389
  comEA Legionella pneumophila str. Paris

35.714

100

0.368
  comEA Legionella pneumophila strain ERS1305867

35.714

100

0.368